View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7826_low_5 (Length: 622)
Name: NF7826_low_5
Description: NF7826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7826_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 19 - 325
Target Start/End: Complemental strand, 2306775 - 2306471
Alignment:
| Q |
19 |
atactaagtttgacaggtagttttgtttcgtattagggtaaaaaatagaaattccgctaaatcctagtcctagtttaaaagagtaaaagctattcaaaga |
118 |
Q |
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| T |
2306775 |
atactaagtttgacaggtagttttgtttcatattagggtaaaaaatagaaattccgctaaatcctagtcctagtttaaaagagtaaaagctattcaaaga |
2306676 |
T |
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| Q |
119 |
caaaattgttgtcctattagaccaaatgccaataatttctctcttgtttgacttaattcccactaatccatgatcattgcacatggtgctatctttccaa |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||| |
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| T |
2306675 |
caaaattgttgtcctattagaccaaatgccaataatttctctcttgtttgacttaattccctct--tgtttgatcattgcacatggtgctatctttccaa |
2306578 |
T |
|
| Q |
219 |
tattgtgattggcctatagatataggctatagcacatccatgtgccttagtcctacttggtaaattgttttttcttttaaaaaagatatttgttgttcac |
318 |
Q |
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|||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2306577 |
tattgtgattggtctatagatataggctatcgcacatccatgtgccttagtccaacttggtaaattgttttttcttttaaaaaagatatttgttgttcac |
2306478 |
T |
|
| Q |
319 |
atttttc |
325 |
Q |
| |
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||||||| |
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| T |
2306477 |
atttttc |
2306471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 407 - 615
Target Start/End: Complemental strand, 2306388 - 2306175
Alignment:
| Q |
407 |
gatttattactttgctatataaaaaatcagagagacaatacagtataatataaactaaatacatcatttattttattaatttnnnnnnnnnnttctctta |
506 |
Q |
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|||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
2306388 |
gatttattgctttgctatataaaaaatcagagagataatacagtataatataaactaaatacatcatttattttattaatttaaaaaaaaaattctctta |
2306289 |
T |
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| Q |
507 |
tatttaagacca------gtatcaaaatttaaatttgtaaagcagtaaatattctaactaaataattctttactgtgtaccccttattactacaaaatta |
600 |
Q |
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|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
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| T |
2306288 |
tatttaagaccaaatatagtatcaaa-tttaaatttgtaaagcagtaaatattctaactaaagaattctttactgtgtaccctgtattactacaaaatta |
2306190 |
T |
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| Q |
601 |
ttcccttatattctt |
615 |
Q |
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||||||||||||||| |
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| T |
2306189 |
ttcccttatattctt |
2306175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 450 - 478
Target Start/End: Complemental strand, 28923085 - 28923057
Alignment:
| Q |
450 |
tataatataaactaaatacatcatttatt |
478 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
28923085 |
tataatataaactaaatacatcatttatt |
28923057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 450 - 478
Target Start/End: Original strand, 34181569 - 34181597
Alignment:
| Q |
450 |
tataatataaactaaatacatcatttatt |
478 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
34181569 |
tataatataaactaaatacatcatttatt |
34181597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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