View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7826_low_50 (Length: 242)
Name: NF7826_low_50
Description: NF7826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7826_low_50 |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 44642512 - 44642741
Alignment:
| Q |
1 |
tattataattaactattgtgggtgcatgtgaacgtgtttta----gttgtgaaatattaaaggatt-gaatacctatatttaaattgataatagctggct |
95 |
Q |
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| T |
44642512 |
tattataattaactattgtgggtgcatgtgaacgtgttttaattagttgtgaaatattaaaggatttgaatacctatatttaaattgataatagctggct |
44642611 |
T |
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| Q |
96 |
cgtccttgtgagcaagaagtagagtcttcagattagcacaatcaatctcaccagtaaccaatgtgctaactttcatgcatttcattctatacattcttgc |
195 |
Q |
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| T |
44642612 |
tgtccttgtgggcaagaagtagagtcttcagattagcacaatcaatctcaccagtaaccaatgtgctaactttcatgcatttcattctatacattcttgc |
44642711 |
T |
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| Q |
196 |
tatcttgaatattgaataatgtgagtcttg |
225 |
Q |
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| T |
44642712 |
tatcttgaatattgaataatgtgagtcttg |
44642741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 60 - 225
Target Start/End: Original strand, 44669242 - 44669407
Alignment:
| Q |
60 |
attgaatacctatatttaaattgataatagctggctcgtccttgtgagcaagaagtagagtcttcagattagcacaatcaatctcaccagtaaccaatgt |
159 |
Q |
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||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||| |||| ||||||||||||||||||| | | |||||| |
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| T |
44669242 |
attgaatacctatatttaaattgatgatagctggcttgtccttatgagcaagaagtagagtctttagatcagcacaatcaatctcaccattgatcaatgt |
44669341 |
T |
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| Q |
160 |
gctaactttcatgcatttcattctatacattcttgctatcttgaatattgaataatgtgagtcttg |
225 |
Q |
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| T |
44669342 |
gccaacttttatgcattgcattctatatattcttgctatcttgaatattgaataatgtgaatcttg |
44669407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 44684347 - 44684394
Alignment:
| Q |
178 |
cattctatacattcttgctatcttgaatattgaataatgtgagtcttg |
225 |
Q |
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| T |
44684347 |
cattctatacattcttgctattttgaatattgaataatgtgactcttg |
44684394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 29340452 - 29340400
Alignment:
| Q |
173 |
catttcattctatacattcttgctatcttgaatattgaataatgtgagtcttg |
225 |
Q |
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| T |
29340452 |
cattgcattcgatacattcttgcaattttgaatatcgaataatgtgaatcttg |
29340400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 29353407 - 29353355
Alignment:
| Q |
173 |
catttcattctatacattcttgctatcttgaatattgaataatgtgagtcttg |
225 |
Q |
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|||| ||||| |||||||||||| || |||||||| ||||||||||| ||||| |
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| T |
29353407 |
cattgcattcgatacattcttgcaattttgaatatcgaataatgtgaatcttg |
29353355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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