View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7826_low_53 (Length: 240)
Name: NF7826_low_53
Description: NF7826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7826_low_53 |
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Alignment Details
Target: chr2 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 25 - 177
Target Start/End: Complemental strand, 20981553 - 20981402
Alignment:
| Q |
25 |
aagatattgcagctccagtgactcgatcttcctttcttccaataattccaccattgcaccatcattatcaataacgctagtgcttgaagctggtttgtaa |
124 |
Q |
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| T |
20981553 |
aagatattgcagctccagtgacccaatcttcctttcttccaatcattccaccat-gcaccatcattatcaataacgctagtgcttgaagctgggttgtaa |
20981455 |
T |
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| Q |
125 |
acctaagatttataaaagaccctattagacagcatagtgaaactacaacgcac |
177 |
Q |
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| T |
20981454 |
acctacgatttagaaaagaccctattagacagcatagtgaaactacaacgcac |
20981402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 18 - 177
Target Start/End: Complemental strand, 20968731 - 20968569
Alignment:
| Q |
18 |
ataaatgaagatattgcagctccagtgactcgatcttcctttcttccaataattccaccattgcaccatcattatcaataacgctagtgcttgaagctgg |
117 |
Q |
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| T |
20968731 |
ataaatgaagatattgcagctctagtgactcgatcttcctttcttccaatcattccatcatt-caccgtcattatcaataacgctagtgcttgaagctgg |
20968633 |
T |
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| Q |
118 |
tttgtaaacctaagatttataaaagaccctattagacagc----atagtgaaactacaacgcac |
177 |
Q |
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| T |
20968632 |
gttgtaaacctacgatttagaaaagactctattagacagcatatatagtgaaactacaacgcac |
20968569 |
T |
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