View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7826_low_55 (Length: 234)
Name: NF7826_low_55
Description: NF7826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7826_low_55 |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 11 - 216
Target Start/End: Complemental strand, 7153105 - 7152898
Alignment:
| Q |
11 |
gagatgaagtatattagcgttgttgaagaaatctttgtctttgaatgatagtataaatgttaagatatcttgg-agaaccgtggtcaacacatcagtcat |
109 |
Q |
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| T |
7153105 |
gagatgaagtatattagcgttgttgaagaaatctttgtctttgaatgatagtataaatgttaagatatcttgggagaatcgtggtcaacacatcagtcat |
7153006 |
T |
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| Q |
110 |
tcaatttcattaatgatgtcaattatggagctttactctcttgcttgagtcagaataaactatcatttcttatctaagagtcg-tgtgtacatgcatgat |
208 |
Q |
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| T |
7153005 |
tcaatttcattaatgatgtcaattatggagctttactctcttgcttgagtcagaataaactatcctttcttatctaagagtcgttgcgtacatgcatgat |
7152906 |
T |
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| Q |
209 |
gattcttt |
216 |
Q |
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| T |
7152905 |
gattcttt |
7152898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 119
Target Start/End: Original strand, 9021399 - 9021488
Alignment:
| Q |
30 |
ttgttgaagaaatctttgtctttgaatgatagtataaatgttaagatatcttggagaaccgtggtcaacacatcagtcattcaatttcat |
119 |
Q |
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| T |
9021399 |
ttgttgaagaaatcattatctttggatgtttgaatgaatgctaagatatcttggagatttgaggtcagcacttcagtcattcaatgtcat |
9021488 |
T |
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