View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7826_low_58 (Length: 227)
Name: NF7826_low_58
Description: NF7826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7826_low_58 |
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| [»] chr6 (8 HSPs) |
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| [»] scaffold0264 (1 HSPs) |
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| [»] scaffold0074 (1 HSPs) |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 20205691 - 20205465
Alignment:
| Q |
1 |
gtccacttattggtgacaaaaacgagaagtttgcaaccaaagaagcacaagattcggaaaatcagaccctttactgtctagctcagtgcacgccggattt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20205691 |
gtccacttattggtgacaaaaacgagaagtttgcaaccaaagaagcacaagattcggaaaatcagaccctttactgtctagctcagtgcacgccggattt |
20205592 |
T |
|
| Q |
101 |
gtcgcctaatgattgcagaaactgtctcagtagtgctattgagaaagtttcaaagagttgtgatggaaaggtgggagggagatttctttatcctagctgt |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20205591 |
gtcgcctaatgattgcagaacctgtctcagtagtgctattgagaaagtttcaaagagttgtgatggaaaggtgggagggagatttctttatcctagctgt |
20205492 |
T |
|
| Q |
201 |
aatgtaaggtatgaattatatccattt |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
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|
| T |
20205491 |
aatgtaaggtatgaattatatccattt |
20205465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 22099714 - 22099488
Alignment:
| Q |
1 |
gtccacttattggtgacaaaaacgagaagtttgcaaccaaagaagcacaagattcggaaaatcagaccctttactgtctagctcagtgcacgccggattt |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22099714 |
gtccacttattggtgacaaaaacgagaagtttgcaaccaaagaagcacaagattcggaaaatcagaccctttactgtctagctcagtgcacgccggattt |
22099615 |
T |
|
| Q |
101 |
gtcgcctaatgattgcagaaactgtctcagtagtgctattgagaaagtttcaaagagttgtgatggaaaggtgggagggagatttctttatcctagctgt |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22099614 |
gtcgcctaatgattgcagaacctgtctcagtagtgctattgagaaagtttcaaagagttgtgatggaaaggtgggagggagatttctttatcctagctgt |
22099515 |
T |
|
| Q |
201 |
aatgtaaggtatgaattatatccattt |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
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| T |
22099514 |
aatgtaaggtatgaattatatccattt |
22099488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 27 - 227
Target Start/End: Complemental strand, 21972229 - 21972029
Alignment:
| Q |
27 |
aagtttgcaaccaaagaagcacaagattcggaaaatcagaccctttactgtctagctcagtgcacgccggatttgtcgcctaatgattgcagaaactgtc |
126 |
Q |
| |
|
||||||||||| |||||||||| || |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||| |
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|
| T |
21972229 |
aagtttgcaacaaaagaagcacgagtttcggaaaatcagaccctttacagtctagctcagtgcacgctggatttgtcgcctaatgattgcagaacctgtc |
21972130 |
T |
|
| Q |
127 |
tcagtagtgctattgagaaagtttcaaagagttgtgatggaaaggtgggagggagatttctttatcctagctgtaatgtaaggtatgaattatatccatt |
226 |
Q |
| |
|
||| |||||||||||||| | ||||| | || |||| ||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
21972129 |
tcactagtgctattgagacactttcacaaagctgtgttggaaaggttggtgggagatttctttatcctagctgtaatgttaggtatgaattatatccatt |
21972030 |
T |
|
| Q |
227 |
t |
227 |
Q |
| |
|
| |
|
|
| T |
21972029 |
t |
21972029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 20086371 - 20086149
Alignment:
| Q |
1 |
gtccacttattggtgacaaaaacgagaagtttgcaaccaaagaagcacaagatt-cggaaaatcagaccctttactgtctagctcagtgcacgccggatt |
99 |
Q |
| |
|
||||||||| | |||||| ||| |||||||||| || ||||||||| | |||| | ||| |||||||||||||||||||||||||||||||||||| | |
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| T |
20086371 |
gtccacttactactgacaacaacaagaagtttgccacaaaagaagca-aggatttctgaatctcagaccctttactgtctagctcagtgcacgccggact |
20086273 |
T |
|
| Q |
100 |
tgtcgcctaatgattgcagaaactgtctcagtagtgctattgagaaagtttcaaagagttgtgatggaaaggtgggagggagatttctttatcctagctg |
199 |
Q |
| |
|
|||| || ||||||||||| |||||||| |||||||||||||||| || | | ||||||||||||||||||| |||||| |||||| ||||||||| |
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| T |
20086272 |
tgtcacccggtgattgcagaacctgtctcaatagtgctattgagaaacttcctagctgttgtgatggaaaggtgggtgggagagttctttttcctagctg |
20086173 |
T |
|
| Q |
200 |
taatgtaaggtatgaattatatcc |
223 |
Q |
| |
|
|||||| ||||||||||||||||| |
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| T |
20086172 |
taatgttaggtatgaattatatcc |
20086149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 62 - 223
Target Start/End: Original strand, 22204853 - 22205014
Alignment:
| Q |
62 |
tcagaccctttactgtctagctcagtgcacgccggatttgtcgcctaatgattgcagaaactgtctcagtagtgctattgagaaagtttcaaagagttgt |
161 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| ||||| || ||||||||||| |||||| | ||||||||||||| || || | | ||||| |
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| T |
22204853 |
tcagaccctttactgcctagctcagtgcacgccggacttgtcacccggtgattgcagaacctgtcttaatagtgctattgaggaacttcctagctgttgt |
22204952 |
T |
|
| Q |
162 |
gatggaaaggtgggagggagatttctttatcctagctgtaatgtaaggtatgaattatatcc |
223 |
Q |
| |
|
|||||||||||||| | |||| || ||| ||||||||||||| | ||||||||| ||||||| |
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| T |
22204953 |
gatggaaaggtgggtgcgagagttgtttttcctagctgtaatattaggtatgaactatatcc |
22205014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 64 - 142
Target Start/End: Original strand, 24385068 - 24385146
Alignment:
| Q |
64 |
agaccctttactgtctagctcagtgcacgccggatttgtcgcctaatgattgcagaaactgtctcagtagtgctattga |
142 |
Q |
| |
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|||| ||||||| | |||||||||||||||| || ||||| |||||||||||||||| |||||||| |||||||||||| |
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| T |
24385068 |
agacgctttactatttagctcagtgcacgccagacttgtcccctaatgattgcagaacctgtctcaatagtgctattga |
24385146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 69 - 223
Target Start/End: Complemental strand, 20238216 - 20238062
Alignment:
| Q |
69 |
ctttactgtctagctcagtgcacgccggatttgtcgcctaatgattgcagaaactgtctcagtagtgctattgagaaagtttcaaagagttgtgatggaa |
168 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||| ||||||||||||| ||| ||| || |||||||| |||| ||||||| | |||||||| |
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| T |
20238216 |
ctttactgtctagctcagtgcacgccagacttgtcgttcaatgattgcagaacctgcctcggttgtgctattaggaaactttcaaatgtgtatgatggaa |
20238117 |
T |
|
| Q |
169 |
aggtgggagggagatttctttatcctagctgtaatgtaaggtatgaattatatcc |
223 |
Q |
| |
|
|| ||| |||||| | | |||||||| |||||| | |||||||| ||||||| |
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|
| T |
20238116 |
agcagggtgggagaaatttatatcctagttgtaatattaggtatgagctatatcc |
20238062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 69 - 223
Target Start/End: Complemental strand, 22132200 - 22132046
Alignment:
| Q |
69 |
ctttactgtctagctcagtgcacgccggatttgtcgcctaatgattgcagaaactgtctcagtagtgctattgagaaagtttcaaagagttgtgatggaa |
168 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||| ||||||||||||| ||| ||| || |||||||| |||| ||||||| | |||||||| |
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|
| T |
22132200 |
ctttactgtctagctcagtgcacgccagacttgtcgttcaatgattgcagaacctgcctcggttgtgctattaggaaactttcaaatgtgtatgatggaa |
22132101 |
T |
|
| Q |
169 |
aggtgggagggagatttctttatcctagctgtaatgtaaggtatgaattatatcc |
223 |
Q |
| |
|
|| ||| |||||| | | |||||||| |||||| | |||||||| ||||||| |
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|
| T |
22132100 |
agcagggtgggagaaatttatatcctagttgtaatattaggtatgagctatatcc |
22132046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0264 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0264
Description:
Target: scaffold0264; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 16320 - 16098
Alignment:
| Q |
1 |
gtccacttattggtgacaaaaacgagaagtttgcaaccaaagaagcacaagattcggaaaatcagaccctttactgtctagctcagtgcacgccggattt |
100 |
Q |
| |
|
||||||||||||| |||| ||| ||||||||||||| |||||||||| || |||| ||||||||||||| ||||||||||||||||||||||| || || |
|
|
| T |
16320 |
gtccacttattggagacataaaaaagaagtttgcaacaaaagaagcacgagtttcgaaaaatcagaccctatactgtctagctcagtgcacgccagactt |
16221 |
T |
|
| Q |
101 |
gtcgcctaatgattgcagaaactgtctcagtagtgctattgagaaagtttcaaagagttgtgatggaaaggtgggagggagatttctttatcctagctgt |
200 |
Q |
| |
|
||| ||||| ||||||||| ||||||| || ||||||||| || | | || || ||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
16220 |
gtctcctaacaattgcagaacctgtctctatactgctattgatcttcttcctctgtgtggttatggaaaggtgggtgggagatttcttttgcctagctgt |
16121 |
T |
|
| Q |
201 |
aatgtaaggtatgaattatatcc |
223 |
Q |
| |
|
||||| ||||||||| ||||||| |
|
|
| T |
16120 |
aatgttaggtatgaactatatcc |
16098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 47621 - 47762
Alignment:
| Q |
1 |
gtccacttattggtgacaaaaacgagaagtttgcaaccaaagaagcacaagattcggaaaatcagaccctttactgtctagctcagtgcacgccggattt |
100 |
Q |
| |
|
||||||||||||| || | ||| ||||||||||||| |||||||||| || |||| |||| |||||||||||||||||||||||||||||||| || || |
|
|
| T |
47621 |
gtccacttattggagatataaaaaagaagtttgcaacaaaagaagcacgagtttcgaaaaaacagaccctttactgtctagctcagtgcacgccagactt |
47720 |
T |
|
| Q |
101 |
gtcgcctaatgattgcagaaactgtctcagtagtgctattga |
142 |
Q |
| |
|
||| ||||| ||||||||| ||||||| || ||||||||| |
|
|
| T |
47721 |
gtctcctaacaattgcagaacctgtctctatactgctattga |
47762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 58 - 223
Target Start/End: Original strand, 5199 - 5364
Alignment:
| Q |
58 |
aaaatcagaccctttactgtctagctcagtgcacgccggatttgtcgcctaatgattgcagaaactgtctcagtagtgctattgagaaagtttcaaagag |
157 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||||| ||||| ||||| ||||||||| ||||||| ||| |||||||| | || | | | |
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|
| T |
5199 |
aaaatcagaccctgtactgtctagaacagtgcacgccggacttgtcccctaacaattgcagaacctgtctccatagagctattgaatatcttcctatggt |
5298 |
T |
|
| Q |
158 |
ttgtgatggaaaggtgggagggagatttctttatcctagctgtaatgtaaggtatgaattatatcc |
223 |
Q |
| |
|
|||||||||||||| ||| |||||| || ||| ||||||||||||| | ||||||||| ||||||| |
|
|
| T |
5299 |
ttgtgatggaaaggagggtgggagagttgtttttcctagctgtaatattaggtatgaactatatcc |
5364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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