View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7826_low_59 (Length: 227)
Name: NF7826_low_59
Description: NF7826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7826_low_59 |
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Alignment Details
Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 37 - 223
Target Start/End: Original strand, 12221675 - 12221862
Alignment:
| Q |
37 |
ttatagttttgttcgtatttcaattttgctcgtgtcactgtatt--ggtccttctgaaaggnnnnnnnntaattaattggctcctcaaaggaacatgcac |
134 |
Q |
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| T |
12221675 |
ttatagttttgttcgtatttcaattttgctcgtgtcactgtatttgggtccttctgaaaggaaaaaaaa-aattcattggctcctcaaaggaacatgcac |
12221773 |
T |
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| Q |
135 |
actcctcagaaagatttggtaaccttcgttggtcatcgtaagtaataaaatatcaattttaccattacgtgagaatgtgatattcttcg |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||| |
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| T |
12221774 |
actcctcagaaagatttggtaaccttcgttggtcatcgtaagtaataaaatatcaattttaccactacgtgagaatgtgacattattcg |
12221862 |
T |
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