View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7826_low_60 (Length: 222)
Name: NF7826_low_60
Description: NF7826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7826_low_60 |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 6063382 - 6063582
Alignment:
| Q |
1 |
gtgggatctgaatgactcacctgatcagagaaaaaactatgaatcagaagggtgttcaatggaaggtgatgaagttgatgttgatgaaaaaggaaaagga |
100 |
Q |
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| T |
6063382 |
gtgggatctgaatgactcacctgatcagagaaaaaactatgaatcagaagggtgttcaatggaaggtgatgaagttgatgttgatgaaaaaggaaaagga |
6063481 |
T |
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| Q |
101 |
gttggatctgtttcaaattcaagttcatcagcaatagttatagaagatggatcggaagaagaagatggtaacatgatgaagaaaaagagtagtaagatat |
200 |
Q |
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| T |
6063482 |
gttggatctgtttcaaattcaagttcatcagcaatagttatagaagatggatcggaagaagaagatggtaacatgacgaagaaaaagagtagtaagatat |
6063581 |
T |
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| Q |
201 |
t |
201 |
Q |
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| T |
6063582 |
t |
6063582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 147
Target Start/End: Complemental strand, 39156259 - 39156215
Alignment:
| Q |
103 |
tggatctgtttcaaattcaagttcatcagcaatagttatagaaga |
147 |
Q |
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| T |
39156259 |
tggatctgtttcaaattcaagctcttcagctatagtaatagaaga |
39156215 |
T |
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