View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7826_low_61 (Length: 218)
Name: NF7826_low_61
Description: NF7826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7826_low_61 |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-100; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 12 - 203
Target Start/End: Original strand, 39863298 - 39863489
Alignment:
| Q |
12 |
gtttggtggtttgtgagggaagtcttcgaggtcaatattttttgtcttgtctccttcaatgcttcattatcttggtcagtgctttccttggttaaggctc |
111 |
Q |
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| T |
39863298 |
gtttgatggtttgtgagggaagtcttcgaggtcaatattttttgtcttgtctccttcaatgcttcattatcttggtcagtgctttccttggttaaggctc |
39863397 |
T |
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| Q |
112 |
gctcttttttcaaattttcgagtttctcaaacaccttcacaatggtgttgagaaggttaacaaaaacaccaacttgttctaattgacgagac |
203 |
Q |
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| T |
39863398 |
gctcttttttcaaattttcgagtttctcaaacaccttcacaatggtgttgagaaggttaacaacaacaccaacttgttctaattgacgagac |
39863489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 12 - 196
Target Start/End: Complemental strand, 39737997 - 39737813
Alignment:
| Q |
12 |
gtttggtggtttgtgagggaagtcttcgaggtcaatattttttgtcttgtctccttcaatgcttcattatcttggtcagtgctttccttggttaaggctc |
111 |
Q |
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| T |
39737997 |
gtttggtcgtttgtaaaggaagtcattgagttcaatattttctgtctggtttccttcaatgcttcactatcttggtcagtgctcttcttggctatgtttc |
39737898 |
T |
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| Q |
112 |
gctcttttttcaaattttcgagtttctcaaacaccttcacaatggtgttgagaaggttaacaaaaacaccaacttgttctaattg |
196 |
Q |
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| T |
39737897 |
gctcttttttcaaattttcaattttttcaagcatcctcacaatgttgttgagaaggttaacaacagcaccgacttgttctaattg |
39737813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 12 - 192
Target Start/End: Original strand, 39856099 - 39856279
Alignment:
| Q |
12 |
gtttggtggtttgtgagggaagtcttcgaggtcaatattttttgtcttgtctccttcaatgcttcattatcttggtcagtgctttccttggttaaggctc |
111 |
Q |
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| T |
39856099 |
gtttggtggtctgtgaggcacgcctttgagatcaaaaaattttgtcttgcctccttcaatgcttcattattttggtcagtgctgttcttagtcaagtctt |
39856198 |
T |
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| Q |
112 |
gctcttttttcaaattttcgagtttctcaaacaccttcacaatggtgttgagaaggttaacaaaaacaccaacttgttcta |
192 |
Q |
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| T |
39856199 |
gcaattttttcaaatttttaagttgctcaaacatcctcgcaatgttcttgacaaggttaacaacaacaccgacttgttcta |
39856279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 26 - 195
Target Start/End: Original strand, 39846395 - 39846564
Alignment:
| Q |
26 |
gagggaagtcttcgaggtcaatattttttgtcttgtctccttcaatgcttcattatcttggtcagtgctttccttggttaaggctcgctcttttttcaaa |
125 |
Q |
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| T |
39846395 |
gagggaagtctttgacaacaatattttttgtcttgtcgccttcaattcctcattatcctggtcggtgctcttcttaattgcgtatcgctctttttccaat |
39846494 |
T |
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| Q |
126 |
ttttcgagtttctcaaacaccttcacaatggtgttgagaaggttaacaaaaacaccaacttgttctaatt |
195 |
Q |
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| T |
39846495 |
ttttcgagtttctcaaacatccactcaattttgttgagaaagttaacaacaacatgaacttgttttaatt |
39846564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 38980842 - 38980770
Alignment:
| Q |
13 |
tttggtggtttgtgagggaagtcttcgaggtcaatattttttgtcttgtctccttcaatgcttcattatcttg |
85 |
Q |
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| T |
38980842 |
tttgatggtttgtgaagaaagtccttgagatcaatattttttgtcttgtttctttcaatgctttattatcttg |
38980770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 41 - 196
Target Start/End: Complemental strand, 53495602 - 53495439
Alignment:
| Q |
41 |
ggtcaatattttttgtcttgtctccttcaatgcttcattatcttggtcagtgctttccttggttaa--------ggctcgctcttttttcaaattttcga |
132 |
Q |
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|||||||||||||||||||||| ||| ||||||||||||||||||| ||||| | ||| ||| | | || |||||||||||||||||| | |
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| T |
53495602 |
ggtcaatattttttgtcttgtcacctacaatgcttcattatcttggccagtgttgctcttagttgatacttgcagacttgctcttttttcaaattttaaa |
53495503 |
T |
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| Q |
133 |
gtttctcaaacaccttcacaatggtgttgagaaggttaacaaaaacaccaacttgttctaattg |
196 |
Q |
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||| ||||||| | |||||||| |||||||||||||||||| |||||||| |||||||||||| |
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| T |
53495502 |
ttttttcaaacatcctcacaatgttgttgagaaggttaacaacaacaccaatttgttctaattg |
53495439 |
T |
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