View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7826_low_62 (Length: 216)
Name: NF7826_low_62
Description: NF7826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7826_low_62 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 44642291 - 44642506
Alignment:
| Q |
1 |
attgactcacttgtttaagaagtggcagcatcattccaaataaagctccatcacaatgaatatagaatctatcacgagaaaaaccactttcctcaagtgt |
100 |
Q |
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| T |
44642291 |
attgactcacttgtttaagaagtggcagcatcattccaaataaagctccgtcacaatgaatatagaatcgatcacgagaaaaaccactttcctcaagtgt |
44642390 |
T |
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| Q |
101 |
ctgtattaccatatcaatgttatcaatagctcctttcacagttgttcctaattaaacatttgtcccaaaataagaagaatattttttagcttagccaatt |
200 |
Q |
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| T |
44642391 |
ctgtattactatatcaatgttatcaatagctcctttcacagttgttcctaattaatcatttgtcccaaaataagaagaatattttttagcttagccaatt |
44642490 |
T |
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| Q |
201 |
aaattaaccgtgtaca |
216 |
Q |
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| T |
44642491 |
aaattaattgtgtaca |
44642506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 5 - 155
Target Start/End: Original strand, 44668963 - 44669113
Alignment:
| Q |
5 |
actcacttgtttaagaagtggcagcatcattccaaataaagctccatcacaatgaatatagaatctatcacgagaaaaaccactttcctcaagtgtctgt |
104 |
Q |
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|||||| |||| ||||| ||||||||||||||| || |||||||||||||||||||||||||| | ||| |||| |||||| |||||||| ||||| | |
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| T |
44668963 |
actcacctgttcaagaaatggcagcatcattccgaacaaagctccatcacaatgaatatagaaacgatcgcgaggaaaacctctttcctccagtgtttca |
44669062 |
T |
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| Q |
105 |
attaccatatcaatgttatcaatagctcctttcacagttgttcctaattaa |
155 |
Q |
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| T |
44669063 |
attaccatatcaatgttatcaatagctcctttcatggttgatcctaattaa |
44669113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 5 - 145
Target Start/End: Original strand, 44683934 - 44684074
Alignment:
| Q |
5 |
actcacttgtttaagaagtggcagcatcattccaaataaagctccatcacaatgaatatagaatctatcacgagaaaaaccactttcctcaagtgtctgt |
104 |
Q |
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| T |
44683934 |
actcacttgttttataaaaggcaacataattccaaatagagctccatcacagtgaatgtagaatcgatcacgagtaaaaccacatttctttagtgtttgt |
44684033 |
T |
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| Q |
105 |
attaccatatcaatgttatcaatagctcctttcacagttgt |
145 |
Q |
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| T |
44684034 |
attacaagatcaagatcatcaatacctcctttcatagttgt |
44684074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 150
Target Start/End: Original strand, 44660893 - 44661019
Alignment:
| Q |
24 |
ggcagcatcattccaaataaagctccatcacaatgaatatagaatctatcacgagaaaaaccactttcctcaagtgtctgtattaccatatcaatgttat |
123 |
Q |
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|||| ||| |||||||||| |||||||||||| ||||| ||||||| |||||||| |||||||| || | ||||| |||||||| | ||||| | || |
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| T |
44660893 |
ggcaacataattccaaatagagctccatcacagtgaatgtagaatcgatcacgagtaaaaccacatttatttagtgtttgtattacaagatcaagatcat |
44660992 |
T |
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| Q |
124 |
caatagctcctttcacagttgttccta |
150 |
Q |
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| T |
44660993 |
caatacctcctttcaaagttgtcccta |
44661019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 150
Target Start/End: Complemental strand, 29340768 - 29340642
Alignment:
| Q |
24 |
ggcagcatcattccaaataaagctccatcacaatgaatatagaatctatcacgagaaaaaccactttcctcaagtgtctgtattaccatatcaatgttat |
123 |
Q |
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|||| ||| |||||||||| ||||||||||||||||||||||||| |||||||| |||||||| || || ||||| |||||||| | ||||| | || |
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| T |
29340768 |
ggcaacatgattccaaatagagctccatcacaatgaatatagaattgatcacgagtaaaaccacatttgtctagtgtttgtattacaagatcaagatcat |
29340669 |
T |
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| Q |
124 |
caatagctcctttcacagttgttccta |
150 |
Q |
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| T |
29340668 |
caatcccacctttcaaagttgtcccta |
29340642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 150
Target Start/End: Complemental strand, 29353723 - 29353597
Alignment:
| Q |
24 |
ggcagcatcattccaaataaagctccatcacaatgaatatagaatctatcacgagaaaaaccactttcctcaagtgtctgtattaccatatcaatgttat |
123 |
Q |
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|||| ||| ||||||||||||||||||||||||||||| |||||| |||||||| |||||||| || || ||||| |||||||| | ||||| | || |
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| T |
29353723 |
ggcaacatgattccaaataaagctccatcacaatgaatgtagaattgatcacgagtaaaaccacatttgtctagtgtttgtattacaagatcaagatcat |
29353624 |
T |
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| Q |
124 |
caatagctcctttcacagttgttccta |
150 |
Q |
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| T |
29353623 |
caatcccacctttcaaagttgtcccta |
29353597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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