View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7826_low_65 (Length: 202)
Name: NF7826_low_65
Description: NF7826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7826_low_65 |
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Alignment Details
Target: chr8 (Bit Score: 176; Significance: 5e-95; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 15 - 190
Target Start/End: Complemental strand, 1784885 - 1784710
Alignment:
| Q |
15 |
tggtgttggtataaggttgcaactatgcttaaatcagctggtcataatgttacaactattgacatggctgcttcaggtatcaatccaatacaagttcaag |
114 |
Q |
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| T |
1784885 |
tggtgttggtataaggttgcaactatgcttaaatcagctggtcataatgttacaactattgacatggctgcttcaggtatcaatccaatacaagttcaag |
1784786 |
T |
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| Q |
115 |
agattcattcaatttcaaaatattatgaaccattgatgacatttatggaatctcttcctccaaaggagaaggtgat |
190 |
Q |
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| T |
1784785 |
agattcattcaatttcaaaatattatgaaccattgatgacatttatggaatctcttcctccaaaggagaaggtgat |
1784710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 15 - 187
Target Start/End: Complemental strand, 1772685 - 1772513
Alignment:
| Q |
15 |
tggtgttggtataaggttgcaactatgcttaaatcagctggtcataatgttacaactattgacatggctgcttcaggtatcaatccaatacaagttcaag |
114 |
Q |
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||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
1772685 |
tggtgttggtataaggtggtaactatgcttaaatcagctggtcataatgttacaactattgaattggctgcttcaggtatcaatccaatacaagtccaag |
1772586 |
T |
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| Q |
115 |
agattcattcaatttcaaaatattatgaaccattgatgacatttatggaatctcttcctccaaaggagaaggt |
187 |
Q |
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| T |
1772585 |
agattcattcaatttcaaaatattatgaacccttgatgacatttatggaatctcttcctccaaatgagaaggt |
1772513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 15 - 190
Target Start/End: Complemental strand, 1801695 - 1801520
Alignment:
| Q |
15 |
tggtgttggtataaggttgcaactatgcttaaatcagctggtcataatgttacaactattgacatggctgcttcaggtatcaatccaatacaagttcaag |
114 |
Q |
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| T |
1801695 |
tggtgttggtataaggttgcaactatgcttaaattagctggtcataatgttacaactattgacttggctgcttgtggtatcagtccaatccaggttcaag |
1801596 |
T |
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| Q |
115 |
agattcattcaatttcaaaatattatgaaccattgatgacatttatggaatctcttcctccaaaggagaaggtgat |
190 |
Q |
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| T |
1801595 |
agattcattcaatttcacaatattatgaacctttcatgacatttatggaatctcttcctccaaaggagaaggtgat |
1801520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 15 - 190
Target Start/End: Complemental strand, 1777651 - 1777473
Alignment:
| Q |
15 |
tggtgttggtataaggttgcaactatgcttaaatcagctggtcataatgttacaactattgacatggctgcttcaggtatcaatccaatacaagttcaag |
114 |
Q |
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||||||||||||||||||||||| ||| | ||||||||||||||||||||||| || ||||| ||||||||| ||||||| ||||||||| ||||||| |
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| T |
1777651 |
tggtgttggtataaggttgcaaccatgttgaaatcagctggtcataatgttaccacaattgaattggctgcttgtggtatcagtccaatacaggttcaag |
1777552 |
T |
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| Q |
115 |
agattcat---tcaatttcaaaatattatgaaccattgatgacatttatggaatctcttcctccaaaggagaaggtgat |
190 |
Q |
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|||||||| ||||||||||||||| ||||||| ||||| ||||||| |||||||||||||||||||| |||||||| |
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| T |
1777551 |
agattcattcatcaatttcaaaatatcatgaacctttgatttcatttatagaatctcttcctccaaaggaaaaggtgat |
1777473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 15 - 174
Target Start/End: Complemental strand, 1769014 - 1768855
Alignment:
| Q |
15 |
tggtgttggtataaggttgcaactatgcttaaatcagctggtcataatgttacaactattgacatggctgcttcaggtatcaatccaatacaagttcaag |
114 |
Q |
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|||||||||||||||||||||||| || ||||||||||||||||| || ||| | | ||||||||||||| |||| |||||||| || | |||| |
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| T |
1769014 |
tggtgttggtataaggttgcaactgatctaaaatcagctggtcataaagtcacagcactagacatggctgcttgtggtaccaatccaaagcagatgcaag |
1768915 |
T |
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| Q |
115 |
agattcattcaatttcaaaatattatgaaccattgatgacatttatggaatctcttcctc |
174 |
Q |
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| T |
1768914 |
aggttcattcaatttctgaataccatcaacctttgatgacatttatggagtcacttcctc |
1768855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 128; Significance: 2e-66; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 15 - 190
Target Start/End: Original strand, 25727563 - 25727738
Alignment:
| Q |
15 |
tggtgttggtataaggttgcaactatgcttaaatcagctggtcataatgttacaactattgacatggctgcttcaggtatcaatccaatacaagttcaag |
114 |
Q |
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|||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| || ||||||| ||||||||| ||||||| |
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| T |
25727563 |
tggtcttggtataaggttgcaactatgctgaaatcagctggtcataatgttacaactattgaattggctggttgtggtatcagtccaatacaggttcaag |
25727662 |
T |
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| Q |
115 |
agattcattcaatttcaaaatattatgaaccattgatgacatttatggaatctcttcctccaaaggagaaggtgat |
190 |
Q |
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||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
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| T |
25727663 |
agattcattcaatttcacaatattatgaaccttttatgacatttatggaatctcttcctccaaaggagaaggtgat |
25727738 |
T |
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