View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7826_low_66 (Length: 201)
Name: NF7826_low_66
Description: NF7826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7826_low_66 |
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Alignment Details
Target: chr4 (Bit Score: 108; Significance: 2e-54; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 17 - 176
Target Start/End: Original strand, 17514972 - 17515131
Alignment:
| Q |
17 |
cagagaagctgaggaatttgaaaaagtctgacgggttaagggagtttgaaattgatatgggttccattgtggagtattcgaagattgagtataatcaagt |
116 |
Q |
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| T |
17514972 |
cagagaagatgaggaatttgaaaaattttgacaagttaaaggagtttgaaattgatttgggttcctttgtggagtattcgaagattgagtataatcaagt |
17515071 |
T |
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| Q |
117 |
gtgatggctgcaaatggagcagaagttgagatagttgcaatacttgaagaacaaggaagg |
176 |
Q |
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| T |
17515072 |
gtaatggttggaaatggtgcagaagctgagatagttgcaatacttgaagaacaaggaagg |
17515131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 17 - 182
Target Start/End: Original strand, 17530129 - 17530294
Alignment:
| Q |
17 |
cagagaagctgaggaatttgaaaaagtctgacgggttaagggagtttgaaattgatatgggttccattgtggagtattcgaagattgagtataatcaagt |
116 |
Q |
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| T |
17530129 |
cagagaagctgaggaatttgcagaactctgagggattaaaggagtttgaaactgatctgggttcctctgtggagtatttggagattgagtataatcaatt |
17530228 |
T |
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| Q |
117 |
gtgatggctgcaaatggagcagaagttgagatagttgcaatacttgaagaacaaggaaggagtgtt |
182 |
Q |
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| T |
17530229 |
gtaatagttgaatatggagcagaagctgagatagttgcaatccttgaagaacaaggaaggagtgtt |
17530294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 17 - 175
Target Start/End: Original strand, 16856731 - 16856889
Alignment:
| Q |
17 |
cagagaagctgaggaatttgaaaaagtctgacgggttaagggagtttgaaattgatatgggttccattgtggagtattcgaagattgagtataatcaagt |
116 |
Q |
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| T |
16856731 |
cagagaagttgaggaatttgcagaactatgagtgattaaaggagtttgaaactgatatgggttcctttgtggagtatttggagattgagtataatcaatt |
16856830 |
T |
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| Q |
117 |
gtgatggctgcaaatggagcagaagttgagatagttgcaatacttgaagaacaaggaag |
175 |
Q |
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| T |
16856831 |
gtaattgttggaaatggagcagaagctgagatagttgcaatacttgaagaacaaggaag |
16856889 |
T |
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