View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7826_low_7 (Length: 610)
Name: NF7826_low_7
Description: NF7826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7826_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 476; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 16 - 597
Target Start/End: Complemental strand, 2531841 - 2531245
Alignment:
| Q |
16 |
cacatattaacagctacatgcgaacgtggactattagtgatactcaggttactaacattgagacctttgcatgaatgaaacaagaagacctgtagcatca |
115 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
2531841 |
cacatattaacagctacatgggaacgtggactattagtgatactcagattactaacattgagacccttgcatgaatgaaacaagaagacctgtagcatca |
2531742 |
T |
|
| Q |
116 |
agaaaaatattaatttggtcgttcaatcacnnnnnnnc--gtgtgtgtaggggg-tgtcaattgtttaagatgatacataccccaggtcgagcacatgat |
212 |
Q |
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| T |
2531741 |
ataaaaatattaatttggtcgttcaatcaccttttttttggtgtgtgtagggggatgtcaattgtataagatgatacataccccaggtcgagcacatgat |
2531642 |
T |
|
| Q |
213 |
ttgcattgccaccaagtcgaaccatctccatcgagtactcctcgaccattaccttcaattgtgagtccttctacagattgcacggtaatccaatatgact |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2531641 |
ttgcattgccaccaagtcgaaccatctccatcgagtactcctcgaccattaccttcaattgtgagtccttctacagattgcacggtaatccaatatgact |
2531542 |
T |
|
| Q |
313 |
gagctttccaacctacctttgaaggtgcaactattttcccttcaagctacaaaaagatagatggcaaaaatacaaaacaaatataatttctttaaatatt |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2531541 |
gagctttccaacctacctttgaaggtgcaactattttcccttcaagctacaaaaagatagatggcaaaaatacaaaacaaatataatttctttaaatatt |
2531442 |
T |
|
| Q |
413 |
ttaaaagccgcaatt------------aaaacttatacatatgattataagtttattgtactaggtcttaaaagtgaacgttagatatactaaatacctg |
500 |
Q |
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| T |
2531441 |
ttaaaagccgcaattaaaaatacaattaaaacttatacatatgattataagtttattgtactaggtcttaaaagtgaatgttagatatattaaatacctg |
2531342 |
T |
|
| Q |
501 |
aataagaatatttttgttggtgcaaggaccgctaaaacttagtttcgacaccataaatgtttttcctgctggtatgaccagtgttgacatctctgct |
597 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
2531341 |
aataagaatatttttgttggtgcaaggaccgctaaaacttagtttcgacaccataaatgtttttcctacgggtatgaccagtgttgacatctctgct |
2531245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 169 - 597
Target Start/End: Complemental strand, 2541008 - 2540581
Alignment:
| Q |
169 |
gtcaattgtttaagatgatacataccccaggtcgagcacatgatttgcattgccaccaagtcgaaccatctccatcgagtactcctcgaccattaccttc |
268 |
Q |
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| T |
2541008 |
gtcaattgtttaagatgatacataccccaggtcgatcacatgatttgcattgccaccaagtcgaaccatctccatcgagtactcctcgaccatgaccatt |
2540909 |
T |
|
| Q |
269 |
aattgtgagtccttctacagattgcacggtaatccaatatgactgagctttccaacctacctttgaaggtgcaactattttcccttcaagctacaaaaag |
368 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
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| T |
2540908 |
aattgtgagtccttctacagattgcacggtaatccaatatgactgagctttccaatgtaccttagaaggtgcaactattttcccttcaagctacaaaaag |
2540809 |
T |
|
| Q |
369 |
atagatggcaaaaatacaaaacaaatataatttctttaaatattttaaaagccgcaattaaaacttatacatatgattataagtttattgtactaggtct |
468 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
2540808 |
atagatggcaaaaatacaaaacaaatataatttctttaatcattttaaaagccgcaattaaaacttataca-atgattataagtttattgtactaggtct |
2540710 |
T |
|
| Q |
469 |
taaaagtgaacgttagatatactaaatacctgaataagaatatttttgttggtgcaaggaccgctaaaacttagtttcgacaccataaatgtttttcctg |
568 |
Q |
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|||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
2540709 |
taaaagtgaatgttagatatattaaatacctgaataagaatatgtttgttggtgcaaggaccgttaaaacttagtttcgacaccataaatgtttttccta |
2540610 |
T |
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| Q |
569 |
ctggtatgaccagtgttgacatctctgct |
597 |
Q |
| |
|
||||||| ||||||||||||||||||||| |
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| T |
2540609 |
ctggtataaccagtgttgacatctctgct |
2540581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 16 - 145
Target Start/End: Complemental strand, 2541384 - 2541255
Alignment:
| Q |
16 |
cacatattaacagctacatgcgaacgtggactattagtgatactcaggttactaacattgagacctttgcatgaatgaaacaagaagacctgtagcatca |
115 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
2541384 |
cacatattaacagctacatgggaacgtggactattagtgatactcagattactaacattgagacccttgcatgaatgaaacaagaagacctgtagcatca |
2541285 |
T |
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| Q |
116 |
agaaaaatattaatttggtcgttcaatcac |
145 |
Q |
| |
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| T |
2541284 |
ataaaaatattaatttggtcgttcaatcac |
2541255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 221 - 381
Target Start/End: Complemental strand, 1829743 - 1829582
Alignment:
| Q |
221 |
ccaccaagtcgaaccatctccatcgagtactcctcgaccattaccttcaattgtgagtccttctacagattgcacggtaatccaatatgactgagctttc |
320 |
Q |
| |
|
||||||||| ||||| |||||||| ||| ||||| |||||||||| |||||||||||||| | |||| ||| | |||| ||||||||| || |||||| |
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| T |
1829743 |
ccaccaagtagaaccgtctccatcaagtcctccttgaccattaccatcaattgtgagtccatttacatattcaatagtaaaccaatatgattgtgctttc |
1829644 |
T |
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| Q |
321 |
caacctacctttgaaggtgcaactattttcccttcaagctacaa-aaagatagatggcaaaa |
381 |
Q |
| |
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|| | |||| || ||||||||||| | ||||||||||| ||| | |||||||||| |||| |
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| T |
1829643 |
gaatttgccttagagggtgcaactatctgcccttcaagctgcaatatagatagatggaaaaa |
1829582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 221 - 381
Target Start/End: Complemental strand, 1864188 - 1864027
Alignment:
| Q |
221 |
ccaccaagtcgaaccatctccatcgagtactcctcgaccattaccttcaattgtgagtccttctacagattgcacggtaatccaatatgactgagctttc |
320 |
Q |
| |
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||||||||| ||||| |||||||| ||| ||||| |||||||||| |||||||||||||| | |||| ||| | |||| ||||||||| || |||||| |
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| T |
1864188 |
ccaccaagtagaaccgtctccatcaagtcctccttgaccattaccatcaattgtgagtccatttacatattcaatagtaaaccaatatgattgtgctttc |
1864089 |
T |
|
| Q |
321 |
caacctacctttgaaggtgcaactattttcccttcaagctacaa-aaagatagatggcaaaa |
381 |
Q |
| |
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|| | |||| || ||||||||||| | ||||||||||| ||| | |||||||||| |||| |
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| T |
1864088 |
gaatttgccttagagggtgcaactatctgcccttcaagctgcaatatagatagatggaaaaa |
1864027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 527 - 591
Target Start/End: Complemental strand, 1827912 - 1827848
Alignment:
| Q |
527 |
gaccgctaaaacttagtttcgacaccataaatgtttttcctgctggtatgaccagtgttgacatc |
591 |
Q |
| |
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||||||||||| ||| ||||||||||||||||||||||||||| ||||| || |||||||||||| |
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| T |
1827912 |
gaccgctaaaaattactttcgacaccataaatgtttttcctgccggtataactagtgttgacatc |
1827848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 527 - 591
Target Start/End: Complemental strand, 1862357 - 1862293
Alignment:
| Q |
527 |
gaccgctaaaacttagtttcgacaccataaatgtttttcctgctggtatgaccagtgttgacatc |
591 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||||||||||| ||||| || |||||||||||| |
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| T |
1862357 |
gaccgctaaaaattactttcgacaccataaatgtttttcctgccggtataactagtgttgacatc |
1862293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 521 - 597
Target Start/End: Complemental strand, 2562505 - 2562429
Alignment:
| Q |
521 |
tgcaaggaccgctaaaacttagtttcgacaccataaatgtttttcctgctggtatgaccagtgttgacatctctgct |
597 |
Q |
| |
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|||||||||| |||||| || |||||||||||| || ||||||| |||||||| | |||||||||||| ||||| |
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| T |
2562505 |
tgcaaggaccactaaaatttgctttcgacaccatgtatttttttccagctggtattattagtgttgacatccctgct |
2562429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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