View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7826_low_8 (Length: 583)
Name: NF7826_low_8
Description: NF7826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7826_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 379; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 7 - 547
Target Start/End: Complemental strand, 11461563 - 11461031
Alignment:
| Q |
7 |
cgcatctcgaataatattgttttcacttgagaaaatttaaaagaaaatgtgctctaacaatattgtcgcgtggagagttctcccaannnnnnnaagaatg |
106 |
Q |
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| T |
11461563 |
cgcatcttaaataagattgttttcacttgaaaaaatttaaaagaaaatgtgctccgacaat--tgtcgcatggagagttctcccaatttttttaagaatg |
11461466 |
T |
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| Q |
107 |
tcaaagacaagcatgaaattttagagggtgtatggaagtaagatgtacaagttagggggataagaaagaattttcataattgtgtcatctttacttcaat |
206 |
Q |
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| T |
11461465 |
tcaaagacaagcatgaaatttcagagggtgtatggaagtaagatgtacaagttagggg-ataagagagaatttttataattgtgtcatctttacttcaat |
11461367 |
T |
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| Q |
207 |
tcatggccccatcttgaaattcttattgagaaaccgcagatagccctcctcagctagagggggacaccaaacacctgaagagcttcaatgtccttcatag |
306 |
Q |
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| T |
11461366 |
tcatggccccatcttgaaattcttattgagaaaccgcacatagtccttcataac-agagagttaga--aaatacat--agagcttcaatgtccttcatag |
11461272 |
T |
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| Q |
307 |
tccatcttgcagagagtcagtcctaataaatccataaacaattaactaacaaaccacaatcacataaattaacaaactatcaagtaacctaaaactctgg |
406 |
Q |
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| T |
11461271 |
tccatcttgcagagagtcagtcctaataaatccataaacaattaactaacaaaccacaatcacataaattaacaaactatcaagtaacctaaaactctgg |
11461172 |
T |
|
| Q |
407 |
atcaattgcagtagaaataattctaatcacgaaagaaatttgaagaagatatataacttgtttcaatatttctatcaaacgcttggtgagaaaatattaa |
506 |
Q |
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| T |
11461171 |
atcaattgcagtggaaataattctaatcacgaaagaaatttgaagaagatatataacttgtttcaatatttctatcaaacgcttggtgagaaaatattaa |
11461072 |
T |
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| Q |
507 |
agaatacaatttctcattattggaacactctttcaagttag |
547 |
Q |
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| T |
11461071 |
agaatacaatttctcattattggaacactctttcaagttag |
11461031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 118 - 240
Target Start/End: Complemental strand, 11442123 - 11442001
Alignment:
| Q |
118 |
catgaaattttagagggtgtatggaagtaagatgtacaagttagggggataagaaagaattttcataattgtgtcatctttacttcaattcatggcccca |
217 |
Q |
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| T |
11442123 |
catgaaattttagagggtatatgttagtaagatgtacaagttagggggataagagagatttttcataattatgtcatctttacttcaattcatggcccca |
11442024 |
T |
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| Q |
218 |
tcttgaaattcttattgagaaac |
240 |
Q |
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| T |
11442023 |
tcttgaaagacttattgagaaac |
11442001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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