View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7826_low_9 (Length: 557)
Name: NF7826_low_9
Description: NF7826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7826_low_9 |
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| [»] scaffold0147 (1 HSPs) |
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Alignment Details
Target: scaffold0147 (Bit Score: 487; Significance: 0; HSPs: 1)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 5 - 539
Target Start/End: Original strand, 9436 - 9969
Alignment:
| Q |
5 |
gaagatctgcgaagcttgtcagctgacataattgctagagtttgttttgggagcaattatgtcaaaggaaaagaaatattcacaaagcttagagatcttc |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
9436 |
gaagatctgcgaagcttgtcagctgacataattgctagagtttgttttgggagcaattatgtcaaaggaaaagaaatattcacaaagcttagggatcttc |
9535 |
T |
|
| Q |
105 |
taaaactcctctccaagataaatgttggaattcctggttttaggtattcatgatcattacaaaaactgtttttatatttatcatgtattcatatattatt |
204 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
9536 |
taaaactcctctccaagatatatgttggaattcctggttttaggtattcatgatcatta-aaaaactgtttttatatttatcatgtattcatatattatt |
9634 |
T |
|
| Q |
205 |
attttcttgttcttgttagctatgataataatgtgaaaatgatatcatgatctgttttagatacttgccaaacaaaagcaatagacagatatggagattg |
304 |
Q |
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|||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9635 |
attttcttgttcttgttaactatgataataatgtgaagatgatatcatgatctgttttagatacttgccaaacaaaagcaatagacagatatggagattg |
9734 |
T |
|
| Q |
305 |
gaggaagagattaactcaaatatatcaaagctcgtaaaacagcgccaagaggaaggtcgcgagcaagatctcttacaaatgatacttgagggtgctaaga |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
9735 |
gaggaagagattaactcaaatatatcaaagctcgtaaaacagcgccaagaggaaggtcgcgagcaagatctcttgcaaatgatacttgagggtgctaaga |
9834 |
T |
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| Q |
405 |
attgtgaggggagggatggcctcttgtcaaattcagtcgcacgagacaggttcattgtagataactgcaaaaatatattcttcgctggacacgatactac |
504 |
Q |
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| T |
9835 |
attgtgaggggagtgatggcctgttgtcaaattcagtcacacgagacaggttcattatagataactgcaaaactatattcttcgctggacacgatactac |
9934 |
T |
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| Q |
505 |
ctcaattacagcgtcatggtgcttaatgttgttag |
539 |
Q |
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| T |
9935 |
ctcaattacagcgtcatggtgcttaatgttgttag |
9969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 178; Significance: 9e-96; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 9e-96
Query Start/End: Original strand, 207 - 539
Target Start/End: Original strand, 19207330 - 19207663
Alignment:
| Q |
207 |
tttcttgttcttgttagctatgataataatgtg-aaaatgatatcatgatctgttttagatacttgccaaacaaaagcaatagacagatatggagattgg |
305 |
Q |
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| T |
19207330 |
tttcttgttcttgttaatgatgatactaatgtggaaaatggtaccatgatatgttttagatacttaccaaacaaaagcaatagacagatatggagattag |
19207429 |
T |
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| Q |
306 |
aggaagagattaactcaaatatatcaaagctcgtaaaacagcgccaagaggaaggtcgcgagcaagatctcttacaaatgatacttgagggtgctaagaa |
405 |
Q |
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|| ||||||| |||||||||||||| |||||||||||||| |||||||||||||||| || ||||||||||| |||||||||||||||||||| || || |
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| T |
19207430 |
agaaagagataaactcaaatatatccaagctcgtaaaacaacgccaagaggaaggtcatgaacaagatctcttgcaaatgatacttgagggtgcaaaaaa |
19207529 |
T |
|
| Q |
406 |
ttgtgaggggagggatggcctcttgtcaaattcagtcgcacgagacaggttcattgtagataactgcaaaaatatattcttcgctggacacgatactacc |
505 |
Q |
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||||||||| || |||||| |||| ||||||||| || ||| |||||| |||||| ||||||||||||||| ||||||||| || ||||| |||||||| |
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| T |
19207530 |
ttgtgagggcagtgatggcttcttttcaaattcaatctcacaagacagattcattatagataactgcaaaactatattctttgcgggacatgatactact |
19207629 |
T |
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| Q |
506 |
tcaattacagcgtcatggtgcttaatgttgttag |
539 |
Q |
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|||||||| | || ||||||||||||||||||| |
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| T |
19207630 |
gcaattacatcatcttggtgcttaatgttgttag |
19207663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 19207106 - 19207267
Alignment:
| Q |
1 |
tgatgaagatctgcgaagcttgtcagctgacataattgctagagtttgttttgggagcaattatgtcaaaggaaaagaaatattcacaaagcttagagat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
19207106 |
tgatgaagatctgcgaagcttgtcagctgacataattgctagagttagttttgggagcaattatgtcgaaggaaaagaaatattcacaaagcttagagat |
19207205 |
T |
|
| Q |
101 |
cttctaaaactcctctccaagataaatgttggaattcctggttttaggtattcatgatcatt |
162 |
Q |
| |
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||| |||||||||||||||||||| ||||||||||||| || ||||||||| |||||||||| |
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| T |
19207206 |
cttataaaactcctctccaagatatatgttggaattccgggctttaggtatgcatgatcatt |
19207267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 110; Significance: 4e-55; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 25196667 - 25196824
Alignment:
| Q |
1 |
tgatgaagatctgcgaagcttgtcagctgacataattgctagagtttgttttgggagcaattatgtcaaaggaaaagaaatattcacaaagcttagagat |
100 |
Q |
| |
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|||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
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| T |
25196667 |
tgatgaagatttgcgaagcttgtcggctgacataattgctagagtgtgttttgggagcaattatgttgaaggaaaagaaatattcgcaaagcttagagat |
25196766 |
T |
|
| Q |
101 |
cttctaaaactcctctccaagataaatgttggaattcctggttttaggtattcatgat |
158 |
Q |
| |
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||| ||||||||||||||||||||||| |||||||||| || | ||||||| |||||| |
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| T |
25196767 |
cttataaaactcctctccaagataaatcttggaattccaggctataggtatgcatgat |
25196824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 241 - 537
Target Start/End: Original strand, 25196967 - 25197263
Alignment:
| Q |
241 |
aaatgatatcatgatctgttttagatacttgccaaacaaaagcaatagacagatatggagattggaggaagagattaactcaaatatatcaaagctcgta |
340 |
Q |
| |
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||||| |||||| |||| ||||| |||||||||||||| || |||| ||| ||||||||| ||||| ||||||| |||||||| || | || || ||| |
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| T |
25196967 |
aaatggtatcataatcttatttaggtacttgccaaacaagagaaatatacaaatatggagactggagaaagagataaactcaaaaatcttgaaacttgta |
25197066 |
T |
|
| Q |
341 |
aaacagcgccaagaggaaggtcgcgagcaagatctcttacaaatgatacttgagggtgctaagaattgtgaggggagggatggcctcttgtcaaattcag |
440 |
Q |
| |
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||||| |||||||| ||||| | || ||| ||| || |||| ||||||||||||||| || |||||||| || || ||||||||||| ||||||||| |
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| T |
25197067 |
aaacaatgccaagagaaaggtagtgaacaatttctattgcaaacgatacttgagggtgcaaaaaattgtgaaggaagtgatggcctcttctcaaattcaa |
25197166 |
T |
|
| Q |
441 |
tcgcacgagacaggttcattgtagataactgcaaaaatatattcttcgctggacacgatactacctcaattacagcgtcatggtgcttaatgttgtt |
537 |
Q |
| |
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| ||| ||| ||||||||| |||||||||| ||| ||||||||| ||||| || |||||||| |||||||| | ||||||||||||| ||||| |
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| T |
25197167 |
tttcacaagaaaggttcattatagataactgtaaatctatattctttgctgggcatgatactactgcaattacatcaacatggtgcttaatattgtt |
25197263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 258 - 352
Target Start/End: Original strand, 1762357 - 1762451
Alignment:
| Q |
258 |
gttttagatacttgccaaacaaaagcaatagacagatatggagattggaggaagagattaactcaaatatatcaaagctcgtaaaacagcgccaa |
352 |
Q |
| |
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|||||||||| ||||||||||||||||||||||| || |||||||| ||| ||||||| | ||||| ||||||||||| ||||||| |||||| |
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| T |
1762357 |
gttttagatatttgccaaacaaaagcaatagacaaatgtggagattagagaaagagataagttcaaagatatcaaagctgataaaacaacgccaa |
1762451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 23 - 104
Target Start/End: Original strand, 1762115 - 1762196
Alignment:
| Q |
23 |
tcagctgacataattgctagagtttgttttgggagcaattatgtcaaaggaaaagaaatattcacaaagcttagagatcttc |
104 |
Q |
| |
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|||| |||||||||||| |||| ||||||||||||||||||||| |||||| |||||| || ||||||||||||| |||| |
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| T |
1762115 |
tcaggtgacataattgcaagagcttgttttgggagcaattatgttgaaggaagagaaattttttcaaagcttagagaacttc |
1762196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 462 - 535
Target Start/End: Original strand, 1762567 - 1762640
Alignment:
| Q |
462 |
tagataactgcaaaaatatattcttcgctggacacgatactacctcaattacagcgtcatggtgcttaatgttg |
535 |
Q |
| |
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||||||| ||||||||||||||||| |||||| | || ||||| |||||||| | |||||||||||||||||| |
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| T |
1762567 |
tagataattgcaaaaatatattctttgctggatatgagactactgcaattacaacatcatggtgcttaatgttg |
1762640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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