View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7827_low_1 (Length: 351)
Name: NF7827_low_1
Description: NF7827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7827_low_1 |
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| [»] scaffold0194 (1 HSPs) |
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Alignment Details
Target: scaffold0194 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0194
Description:
Target: scaffold0194; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 188 - 265
Target Start/End: Complemental strand, 6681 - 6604
Alignment:
| Q |
188 |
ggtcagagtcttcagctgctgacgtggtcttcagatgcttgaagccttcaaattcttcattccttcagatgcttctga |
265 |
Q |
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| T |
6681 |
ggtcagagtcttcagctgctgacgtggtattcagatgtatgaatccttcagagtcctcattccttcagatgcttctga |
6604 |
T |
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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 271
Target Start/End: Original strand, 35036483 - 35036565
Alignment:
| Q |
189 |
gtcagagtcttcagctgctgacgtggtcttcagatgcttgaagccttcaaattcttcattccttcagatgcttctgaacgaaa |
271 |
Q |
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| T |
35036483 |
gtcagagtcttcatatgctgatgtggtcttcaaatgcataatgtctttagagtcttcattccttcagatgcttctaaacgaaa |
35036565 |
T |
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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 228
Target Start/End: Original strand, 20648875 - 20648913
Alignment:
| Q |
190 |
tcagagtcttcagctgctgacgtggtcttcagatgcttg |
228 |
Q |
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| T |
20648875 |
tcagagtcttcagctgttgacgtggtcttcagatgcttg |
20648913 |
T |
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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 183 - 226
Target Start/End: Complemental strand, 33013503 - 33013460
Alignment:
| Q |
183 |
aaacaggtcagagtcttcagctgctgacgtggtcttcagatgct |
226 |
Q |
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| T |
33013503 |
aaactggtcagagtcttcagctgctaacatggtcttcagatgct |
33013460 |
T |
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