View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7827_low_4 (Length: 235)
Name: NF7827_low_4
Description: NF7827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7827_low_4 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 17 - 235
Target Start/End: Complemental strand, 44946494 - 44946276
Alignment:
| Q |
17 |
agaaccttaattgggagacatggggaacaacgagcatcttgagtatgtgtttgtgccattgggtttattggtgttctttttgtaccatgcttggcttctc |
116 |
Q |
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| T |
44946494 |
agaaccttaattgggagacatggggaacaacgagcatcttgagtatgtgtttgtgccattgggattattggtgttctttttgtaccatgcttggcttctc |
44946395 |
T |
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| Q |
117 |
ttcactattcttcgtgaacctcatcgaactgtcattggcttaaacgctgagtctcgtattcaatgggttcatgctatgatgagtgtgagtcactcaatta |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44946394 |
ttcactattcttcgtgaacctcatcgaactgtcattggcttaaacgctgagtctcgtattcaatgggttcatgctatgatgagtgtgagtcactcaatta |
44946295 |
T |
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| Q |
217 |
ttttgatgtccatctcatt |
235 |
Q |
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| T |
44946294 |
ttttgattaccatctcatt |
44946276 |
T |
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