View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7828_high_10 (Length: 237)
Name: NF7828_high_10
Description: NF7828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7828_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 45735674 - 45735895
Alignment:
| Q |
1 |
ccaagaggaaatctggaaaagtggaaaatgacgttgataattcgagtttggctttgagtggaatggttcgttttgataatgttgttggtttggctgagcc |
100 |
Q |
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| T |
45735674 |
ccaagaggaaatctggaaaagtggaaagtgacgttgataattcgagtttggctttgagtggaatggttcgttttgataattttgttggtttggctgagcc |
45735773 |
T |
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| Q |
101 |
gaacaaagatgatgcnnnnnnnnggcttggaattgatgggggaatcaaagagagttgtgctgggggacaggtcgaggaatttcagtatattctcttgttg |
200 |
Q |
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| T |
45735774 |
gaacaaagatgatgc-aaaaaagggcttggaattgatgggggaatcaaagagagttgtgctgggggacaggtcgaggaatttcagtatattctcttgttg |
45735872 |
T |
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| Q |
201 |
aacatccaccgataggatatttt |
223 |
Q |
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| T |
45735873 |
aacatccaccgataggatatttt |
45735895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 45746923 - 45747126
Alignment:
| Q |
1 |
ccaagaggaaatctggaaaagtggaaaatgacgttgataattcgagtttggctttgagtggaatggttcgttttgataatgttgttggtttggctgagcc |
100 |
Q |
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|||||| ||||||||||||||| ||| |||| ||||||||||| |||||||||||||||| ||||||| ||| ||||||| ||| |||||||||| || |
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| T |
45746923 |
ccaagaagaaatctggaaaagttgaagatgatgttgataattcaagtttggctttgagtgaaatggtttgttgtgataattctgtgggtttggctgggct |
45747022 |
T |
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| Q |
101 |
gaacaaagatgatgcnnnnnnnnggcttggaattgatgggggaatcaaagagagttgtgctgggggacaggtcgaggaatttcagtatattctcttgttg |
200 |
Q |
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| T |
45747023 |
gaacaaagatgccgc-gaaaaggggctttgaattgatgggggaatcaaagagggttgtgttggaggataggaggaggaagttaagtatattatcttgctg |
45747121 |
T |
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| Q |
201 |
aacat |
205 |
Q |
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||||| |
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| T |
45747122 |
aacat |
45747126 |
T |
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