View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7828_high_2 (Length: 466)
Name: NF7828_high_2
Description: NF7828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7828_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 31 - 451
Target Start/End: Complemental strand, 31845826 - 31845408
Alignment:
| Q |
31 |
aaaagagagagactctaatttgaatttcttctactatgaaatgaaatttactctattatttaatggaggtacatgtgatggccccttgtgttaagtcacg |
130 |
Q |
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| T |
31845826 |
aaaagagagagactctaatttgaatttcttctactatgaagtgaaatttactctattatttaatggaggtacatgtgatggccccttgtgttaagtaacg |
31845727 |
T |
|
| Q |
131 |
tagacgtcaataacgaaagccacttcggcttaaacatgttcgcggttgtaaatattcaacattgcaattattaagttgtctctatagcaagcaacgaaat |
230 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
31845726 |
tagacgtcaataacgaaagccacttcggcttaaacatgttcgcggttgtaaatattcaacattgcaattattaagctgtctctatagcaagcaacgaaat |
31845627 |
T |
|
| Q |
231 |
tttctcctatgattatggctaagcaacgatgcctcaaaaacatgttgtatctttcattccctctttgggtccttattggagtattaattaatttttggca |
330 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31845626 |
tttctcctatgattatggataagcaacgatgcctcaaaaacatgttgtatctttcattccctctttgggtccttattggagtattaattaatttttggca |
31845527 |
T |
|
| Q |
331 |
cattgtggttgttgccatagtgtctactacttctgttgtggctcaaagttgtatccagttaattatgaaaagggtgtgatcctgtctcaatggcatgtca |
430 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31845526 |
cattgtggttgttgccatagtgtctactacttctgttgtggctcaaagttgtatccagttaattatgaaaagggtgtgatcctgtctcaatggcatgtca |
31845427 |
T |
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| Q |
431 |
tgtcttttatctatcatttgt |
451 |
Q |
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|||| ||||||||||||||| |
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| T |
31845426 |
tgtc--ttatctatcatttgt |
31845408 |
T |
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