View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7828_high_4 (Length: 320)
Name: NF7828_high_4
Description: NF7828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7828_high_4 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 113; Significance: 3e-57; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 208 - 320
Target Start/End: Complemental strand, 40898715 - 40898603
Alignment:
| Q |
208 |
acaatttgttcaacatgtttgtaacaaagagaaaaagaggagatggtacctgtgcacttgatcacctgaccagtagtagtgttcgacatagttaaaatgt |
307 |
Q |
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| T |
40898715 |
acaatttgttcaacatgtttgtaacaaagagaaaaagaggagatggtacctgtgcacttgatcacctgaccagtagtagtgttcgacatagttaaaatgt |
40898616 |
T |
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| Q |
308 |
ccgttgtttgctt |
320 |
Q |
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| T |
40898615 |
ccgttgtttgctt |
40898603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 8 - 115
Target Start/End: Complemental strand, 40898931 - 40898824
Alignment:
| Q |
8 |
gccacctctacttcttccatcaccagtggcttccccgcctcccatgcaaccgcagctggttcaaaaacacaatcaagggattcattaagtggttgtatgt |
107 |
Q |
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| T |
40898931 |
gccacctctacttcttccatcaccagtggcttccccgcctcccatgcaaccgcagctggttcaaaaacacaatcaagggattcattaagttgttgtatgc |
40898832 |
T |
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| Q |
108 |
atgtggca |
115 |
Q |
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| T |
40898831 |
atgtggca |
40898824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 8 - 91
Target Start/End: Complemental strand, 40903607 - 40903524
Alignment:
| Q |
8 |
gccacctctacttcttccatcaccagtggcttccccgcctcccatgcaaccgcagctggttcaaaaacacaatcaagggattca |
91 |
Q |
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| T |
40903607 |
gccacctctacttcttccatcaccagcggcttccccgcttcccatgcaaccgcagctggttccaaaacacaatcaagggattca |
40903524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 5 - 65
Target Start/End: Complemental strand, 40880009 - 40879949
Alignment:
| Q |
5 |
ggcgccacctctacttcttccatcaccagtggcttccccgcctcccatgcaaccgcagctg |
65 |
Q |
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| T |
40880009 |
ggcgccacctccacttcctccatcaccagtggcttccctgcctcccatgcaaccgcagctg |
40879949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 219 - 284
Target Start/End: Complemental strand, 40879775 - 40879713
Alignment:
| Q |
219 |
aacatgtttgtaacaaagagaaaaagaggagatggtacctgtgcacttgatcacctgaccagtagt |
284 |
Q |
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| T |
40879775 |
aacatgtttgtaacaaagaaaaaaagag---atggtacctctgcacttgatgacctgaacagtagt |
40879713 |
T |
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