View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7828_high_5 (Length: 278)
Name: NF7828_high_5
Description: NF7828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7828_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 13 - 264
Target Start/End: Original strand, 3650739 - 3650990
Alignment:
| Q |
13 |
aatatcttaccaagtaccaacatgtgcacaatcaacagaaagcaagaaacattatcattttcaagccccaaaagaccaaaaacgttcataaactcagaca |
112 |
Q |
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| T |
3650739 |
aatatcttaccaagtaccaacatgtgcacaatcaatagaaagcaagaaacattataattttcaagccccaaaagaccaaaaacgttcataaactcagaca |
3650838 |
T |
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| Q |
113 |
aaatataatataaaacctttttatagctaaaaaactaagcaggacgtagttgtagtccaaactactttaacggtttaattaattacacctgctatgatct |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |
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| T |
3650839 |
aaatataatataaaacctttttatagctaaaaaactaagcaggacgtagttgtagtccaaactactttaacggtttaactaattatacctgctatgatct |
3650938 |
T |
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| Q |
213 |
gtgacnnnnnnnggacctaactagtggattgaacggtacttactcatatgat |
264 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
3650939 |
gtgacaaaaaaaggacctaactagtggattgaacggtacttactcatatgat |
3650990 |
T |
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