View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7828_high_8 (Length: 247)
Name: NF7828_high_8
Description: NF7828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7828_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 4857620 - 4857371
Alignment:
| Q |
1 |
ttttttacatataaaagaaatctatacacttattgtgtggaaagacaaataaatataacatttataagttatttcag------------aggtagggtct |
88 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||| |
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| T |
4857620 |
ttttttacatataaaagaaatctatacaattattgtgtggaaagacaaataaatataacatctataagttattttagtaaactgtttagaggtagggtct |
4857521 |
T |
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| Q |
89 |
ctatggagttggtgaactttcgttctcgtcctcgtgaggaaagccttctcgccaacgagggcttaaatggggcagtttctacggagatccccacttacat |
188 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||| |
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| T |
4857520 |
ctatggagttggtgaactttcgttctcgtcctcgtgaggaaagccttctcgccaacgagggctcaaatggggcaatttccacggagatccccacttacac |
4857421 |
T |
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| Q |
189 |
gtacaaattgacatacctagataaatgtcaaacattccaacttggatatt |
238 |
Q |
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|||||||||||||| ||||||||||||||||||||| ||||||||||||| |
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| T |
4857420 |
gtacaaattgacatccctagataaatgtcaaacatttcaacttggatatt |
4857371 |
T |
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