View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7828_high_9 (Length: 242)
Name: NF7828_high_9
Description: NF7828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7828_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 27227350 - 27227575
Alignment:
| Q |
1 |
tcaatgaaattgcgtttgggtctattatcagtgtttaatttgcaagtggttttgtttagatttttaattattatcagtgtttctgttgctgagtgttgtg |
100 |
Q |
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| T |
27227350 |
tcaatgaaattgcgtttgggtctattatcagtgtttaatttgcaagtggttttgtttagatttttaattattatcagtgtttctgttgctgagtgttgtc |
27227449 |
T |
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| Q |
101 |
aatgatgtgttttatgggattttgtttggatttacttatttgagcttatgaactgattttaccatctgtgcgactatttccataactctttagtatagct |
200 |
Q |
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| T |
27227450 |
aatgatgtgttttatgggattttgtttggatttacttatttgagcttatgaactgattttaccatctgtgcgactatttccataactctttagtatagct |
27227549 |
T |
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| Q |
201 |
tttaaaaacagattaaagcttatatt |
226 |
Q |
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| T |
27227550 |
tttaaaaacagattatagattatatt |
27227575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 150
Target Start/End: Original strand, 753126 - 753154
Alignment:
| Q |
122 |
ttgtttggatttacttatttgagcttatg |
150 |
Q |
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| T |
753126 |
ttgtttggatttacttatttgagcttatg |
753154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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