View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7828_low_1 (Length: 555)
Name: NF7828_low_1
Description: NF7828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7828_low_1 |
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| [»] scaffold0047 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 433; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 17 - 549
Target Start/End: Complemental strand, 50514933 - 50514384
Alignment:
| Q |
17 |
aaatttcattaggaatattttgagatttgatttaataaaatttacatcgattttatgtatgtcataaatatgattttaaggttgaatgtagaatagttgc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
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| T |
50514933 |
aaatttcattaggaatattttgagatttgatttaataaaatttacatcgattttatgtatttcataaatatgaggttaaggttgaatgtagaatagttgc |
50514834 |
T |
|
| Q |
117 |
aaaaatctacctgaaattctagtgaaatgctcttgatcttcttgaaattggaattacaaagtcacgttttgataatttaaaagcaacaacatggtaaatt |
216 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50514833 |
aaaaatctacctgaaattctaatgaaatgctcttgatcttcttgaaattggaattacaaagtcacgttttgataatttaaaagcaacaacatggtaaatt |
50514734 |
T |
|
| Q |
217 |
tgagtgcaa---atgaaattgtttccctacttacatttctttgggaattttcatcattactttattaagttgcaattgtaagacttatttgttatttagc |
313 |
Q |
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||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50514733 |
tgagtgcaacacatgaaattgtttccctactcgcatttctttgggaattttcatcattactttattaagttgcaattgtaagacttatttgttatttagc |
50514634 |
T |
|
| Q |
314 |
tgtcttcttttgattaaggtgtaaatttcg--------------ttaggaatatatttcaatagtatgagattaaggttgaatgtagaagagtttctata |
399 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |
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| T |
50514633 |
tgtcttcttttgattaaggtgtaaatttcgttaggaatatttcattaggaatatatttcaatattatgagattaaggttgaatgtagaaaagtttctata |
50514534 |
T |
|
| Q |
400 |
cttatctttatcatatgtatgtattgagtaatctaagttttaatatggtttatgtgtcccatctaaaaaacttctttcactctttcttnnnnnnnnttgt |
499 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
50514533 |
cttatctttatcatatgtatgtattgagtaatctaagttttaatatggtttatgtgtcccatctaaaaaacttctttcactctttcttaaaaaaatttgt |
50514434 |
T |
|
| Q |
500 |
catgcttattgctcctcactccattttctcacttattcattttcttttca |
549 |
Q |
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| T |
50514433 |
catgcttattgctcctcactccattttctcacttattcattttcttttca |
50514384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 139 - 353
Target Start/End: Complemental strand, 50515139 - 50514916
Alignment:
| Q |
139 |
tgaaatgctcttgatcttcttgaaattggaattacaaagtcacgttttgataatttaaaagcaacaacatggtaaatttgagtgcaa---atgaaattgt |
235 |
Q |
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||||||||||||||||||||| |||||||| | | ||||| || |||||||||||| ||| ||||||||||||||||||||||| || ||| |||||| |
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| T |
50515139 |
tgaaatgctcttgatcttcttaaaattggagtgataaagtgacattttgataatttcaaatcaacaacatggtaaatttgagtgaaactcatggaattgt |
50515040 |
T |
|
| Q |
236 |
ttccctacttacatttctttgg--gaattt--tcatcattacttta--ttaagttgcaattgtaagacttatttgttatttagctgtcttcttttgatta |
329 |
Q |
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|| |||||| ||||| || | | ||||| |||| ||||||||| || || ||||| ||||||||||||| |||||| ||| |||||| |||| |
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| T |
50515039 |
ttgcctactcacattcctatagccaaatttcatcattattactttattttgaggaataattgcaagacttatttgtcatttagttgttttctttaaatta |
50514940 |
T |
|
| Q |
330 |
aggtgtaaatttcgttaggaatat |
353 |
Q |
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||||||||||||| |||||||||| |
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| T |
50514939 |
aggtgtaaatttcattaggaatat |
50514916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0047 (Bit Score: 133; Significance: 7e-69; HSPs: 3)
Name: scaffold0047
Description:
Target: scaffold0047; HSP #1
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 17 - 353
Target Start/End: Original strand, 46961 - 47298
Alignment:
| Q |
17 |
aaatttcattaggaatattttgagatttgatttaataaaatttacatcgattttatgtatgtcataaatatgattttaaggttgaatgtagaatagttgc |
116 |
Q |
| |
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|||||||||| |||||||||||||||||||||||| ||||||| || |||||||| ||| ||||||||||| ||||||| |||| ||||| |||| | |
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| T |
46961 |
aaatttcattgtgaatattttgagatttgatttaatgaaatttatattgattttatatattccataaatatgaggttaaggtggaatctagaacagttcc |
47060 |
T |
|
| Q |
117 |
aaaaatctacctgaaattctagtgaaatgctcttgatcttcttgaaattggaattacaaagtcacgttttgataatttaaaagcaacaacatggtaaatt |
216 |
Q |
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| | |||||| |||||||||| |||||||||||||||||||| ||| ||||| | |||| ||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
47061 |
acacatctacttgaaattctaatgaaatgctcttgatcttctagaagttggattgccaaaatcacgttttgataatttgaaagcaacaacatggtaaatt |
47160 |
T |
|
| Q |
217 |
tgagtgca---aatgaaattgtttccctacttacatttcttt-gggaattttcatcattactttattaagttgcaattgtaagacttatttgttatttag |
312 |
Q |
| |
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|| ||||| |||||||||||| |||||| |||||||||| |||| |||||| |||||||||||||| |||| |||||||||||||||||||| |
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| T |
47161 |
tgggtgcatctcatgaaattgtttgcctactgacatttctttaaggaaatttcattattactttattaaggaataattttaagacttatttgttattta- |
47259 |
T |
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| Q |
313 |
ctgtcttcttttgattaaggtgtaaatttcgttaggaatat |
353 |
Q |
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|| || |||| |||||| |||||||||| |||| ||||| |
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| T |
47260 |
--gttttattttaattaagttgtaaatttcattagaaatat |
47298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0047; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 134 - 224
Target Start/End: Original strand, 46753 - 46843
Alignment:
| Q |
134 |
tctagtgaaatgctcttgatcttcttgaaattggaattacaaagtcacgttttgataatttaaaagcaacaacatggtaaatttgagtgca |
224 |
Q |
| |
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|||| ||||||||||||||| ||||| |||||||| | ||||||||||||||||||| || ||| ||| |||||| |||||||| ||||| |
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| T |
46753 |
tctaatgaaatgctcttgattttcttaaaattggagtggcaaagtcacgttttgataacttgaaatcaaaaacatgctaaatttgggtgca |
46843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0047; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 46 - 114
Target Start/End: Original strand, 47313 - 47380
Alignment:
| Q |
46 |
atttaataaaatttacatcgattttatgtatgtcataaatatgattttaaggttgaatgtagaatagtt |
114 |
Q |
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||||||||||||||| || |||||||| ||| |||| ||||||| ||| || |||||||||||||||| |
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| T |
47313 |
atttaataaaatttatattgattttatatatttcattaatatga-gttacggctgaatgtagaatagtt |
47380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 449 - 547
Target Start/End: Complemental strand, 38925127 - 38925029
Alignment:
| Q |
449 |
ttatgtgtcccatctaaaaaacttctttcactctttcttnnnnnnnnttgtcatgcttatt-gctcctcactccattttctcacttattcattttctttt |
547 |
Q |
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||||||||||| |||||||||||||||| |||||||||| ||| |||||||||| |||||||||||| ||||||||||||||| |||| |||| |
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| T |
38925127 |
ttatgtgtcccgtctaaaaaacttcttttactctttctt-agaaattttgccatgcttattcgctcctcactcccttttctcacttattccttttttttt |
38925029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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