View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7828_low_13 (Length: 249)

Name: NF7828_low_13
Description: NF7828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7828_low_13
NF7828_low_13
[»] chr4 (6 HSPs)
chr4 (149-237)||(18692374-18692461)
chr4 (149-236)||(18674294-18674389)
chr4 (180-237)||(5083212-5083269)
chr4 (180-230)||(18718903-18718953)
chr4 (183-237)||(18650691-18650745)
chr4 (180-229)||(18683098-18683147)
[»] scaffold0349 (1 HSPs)
scaffold0349 (151-237)||(17818-17903)
[»] chr6 (15 HSPs)
chr6 (151-237)||(27714041-27714126)
chr6 (151-242)||(27702274-27702364)
chr6 (151-237)||(26890190-26890275)
chr6 (151-235)||(26853746-26853829)
chr6 (188-242)||(31289436-31289490)
chr6 (151-227)||(26890566-26890641)
chr6 (154-235)||(26628139-26628219)
chr6 (154-235)||(26734116-26734196)
chr6 (191-237)||(26651235-26651281)
chr6 (191-237)||(26757203-26757249)
chr6 (181-225)||(26631597-26631641)
chr6 (181-225)||(26737572-26737616)
chr6 (180-225)||(27586671-27586716)
chr6 (180-237)||(27712634-27712691)
chr6 (201-237)||(26966229-26966265)
[»] chr8 (4 HSPs)
chr8 (151-235)||(29269934-29270017)
chr8 (90-143)||(26992284-26992337)
chr8 (47-114)||(35979965-35980032)
chr8 (27-114)||(44953023-44953109)
[»] chr3 (1 HSPs)
chr3 (28-104)||(23482671-23482747)
[»] chr7 (1 HSPs)
chr7 (68-113)||(45237102-45237147)
[»] chr2 (2 HSPs)
chr2 (26-133)||(35005789-35005895)
chr2 (30-114)||(43653563-43653647)


Alignment Details
Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 149 - 237
Target Start/End: Original strand, 18692374 - 18692461
Alignment:
Q  149 tctactaagattgaaattctcaaaactcttccaactgagctgcaaagcatatcattactcactgccctttcgaacaaccaacggattct 237  Q
    ||||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  18692374 tctactaagattgaaattctcaaaactct-ccaactgaggtgcaaagcatatcaatactcactgccctttcgaacaaccaacggattct 18692461  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 149 - 236
Target Start/End: Original strand, 18674294 - 18674389
Alignment:
Q  149 tctactaagattgaaattctcaaaactcttccaactgagct---------gcaaagcatatcattactcactgccctttcgaacaaccaacggattc 236  Q
    ||||||||||||||||||||||||||||| |||||||||||         ||||||||||||| |||||||||||||||||| ||||||||||||||    
T  18674294 tctactaagattgaaattctcaaaactct-ccaactgagctaactgaggtgcaaagcatatcaatactcactgccctttcgatcaaccaacggattc 18674389  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 180 - 237
Target Start/End: Complemental strand, 5083269 - 5083212
Alignment:
Q  180 caactgagctgcaaagcatatcattactcactgccctttcgaacaaccaacggattct 237  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||    
T  5083269 caactgagctgcaaagcatatcattactcactgccctttcaaacaatccacggattct 5083212  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 230
Target Start/End: Original strand, 18718903 - 18718953
Alignment:
Q  180 caactgagctgcaaagcatatcattactcactgccctttcgaacaaccaac 230  Q
    |||||||| |||||||||||||| |||||||||||| ||||||||||||||    
T  18718903 caactgaggtgcaaagcatatcaatactcactgcccgttcgaacaaccaac 18718953  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 183 - 237
Target Start/End: Original strand, 18650691 - 18650745
Alignment:
Q  183 ctgagctgcaaagcatatcattactcactgccctttcgaacaaccaacggattct 237  Q
    ||||| |||||||||||||| |||||||| ||| ||||||||||||| |||||||    
T  18650691 ctgaggtgcaaagcatatcaatactcacttcccgttcgaacaaccaatggattct 18650745  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 180 - 229
Target Start/End: Original strand, 18683098 - 18683147
Alignment:
Q  180 caactgagctgcaaagcatatcattactcactgccctttcgaacaaccaa 229  Q
    |||||||| |||||||||||||| ||||||| ||||||| ||||||||||    
T  18683098 caactgaggtgcaaagcatatcaatactcacagcccttttgaacaaccaa 18683147  T

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Target: scaffold0349 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 151 - 237
Target Start/End: Complemental strand, 17903 - 17818
Alignment:
Q  151 tactaagattgaaattctcaaaactcttccaactgagctgcaaagcatatcattactcactgccctttcgaacaaccaacggattct 237  Q
    |||||||||||||||||||||| | || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  17903 tactaagattgaaattctcaaagcact-ccaactgagctgcaaagcatatcattactcgctgccctttcgaacaaccaacggattct 17818  T

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Target: chr6 (Bit Score: 67; Significance: 7e-30; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 151 - 237
Target Start/End: Original strand, 27714041 - 27714126
Alignment:
Q  151 tactaagattgaaattctcaaaactcttccaactgagctgcaaagcatatcattactcactgccctttcgaacaaccaacggattct 237  Q
    |||||||||||||||||||||| | || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  27714041 tactaagattgaaattctcaaagcact-ccaactgagctgcaaagcatatcattactcgctgccctttcgaacaaccaacggattct 27714126  T

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Target: chr6; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 151 - 242
Target Start/End: Original strand, 27702274 - 27702364
Alignment:
Q  151 tactaagattgaaattctcaaaactcttccaactgagctgcaaagcatatcattactcactgccctttcgaacaaccaacggattctctgct 242  Q
    ||||||||| |||||||||||| | || |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  27702274 tactaagatggaaattctcaaagcact-ccaactgagctgcaaagcatatcattactcactgtcctttcgaacaaccaacggattctgtgct 27702364  T

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Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 151 - 237
Target Start/End: Complemental strand, 26890275 - 26890190
Alignment:
Q  151 tactaagattgaaattctcaaaactcttccaactgagctgcaaagcatatcattactcactgccctttcgaacaaccaacggattct 237  Q
    ||||| |||||||||||||| |||||||| ||||||||||||||||||| | |||||||||||||||| |||||||| |||||||||    
T  26890275 tactacgattgaaattctcataactcttc-aactgagctgcaaagcataccgttactcactgccctttagaacaaccgacggattct 26890190  T

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Target: chr6; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 151 - 235
Target Start/End: Complemental strand, 26853829 - 26853746
Alignment:
Q  151 tactaagattgaaattctcaaaactcttccaactgagctgcaaagcatatcattactcactgccctttcgaacaaccaacggatt 235  Q
    |||||| |||||| ||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  26853829 tactaaaattgaatttctcaaaactctac-aactgggctgcaaagcatatcattactcactgccctttcgaacagccaacagatt 26853746  T

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Target: chr6; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 188 - 242
Target Start/End: Complemental strand, 31289490 - 31289436
Alignment:
Q  188 ctgcaaagcatatcattactcactgccctttcgaacaaccaacggattctctgct 242  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  31289490 ctgcaaagcatagcattactcactgccctttcgaacaaccaacggattctgtgct 31289436  T

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Target: chr6; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 151 - 227
Target Start/End: Complemental strand, 26890641 - 26890566
Alignment:
Q  151 tactaagattgaaattctcaaaactcttccaactgagctgcaaagcatatcattactcactgccctttcgaacaacc 227  Q
    ||||| |||||||||||||| |||||||| || |||||||||||||||| | |||||||||||||||| ||||||||    
T  26890641 tactacgattgaaattctcataactcttcaaa-tgagctgcaaagcataccgttactcactgccctttagaacaacc 26890566  T

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Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 154 - 235
Target Start/End: Complemental strand, 26628219 - 26628139
Alignment:
Q  154 taagattgaaattctcaaaactcttccaactgagctgcaaagcatatcattactcactgccctttcgaacaaccaacggatt 235  Q
    ||||||||||||||||||| | || ||||||||| || || ||||||||||||||||| ||| |||||||| ||||||||||    
T  26628219 taagattgaaattctcaaagcact-ccaactgagatgtaatgcatatcattactcacttcccattcgaacagccaacggatt 26628139  T

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Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 154 - 235
Target Start/End: Complemental strand, 26734196 - 26734116
Alignment:
Q  154 taagattgaaattctcaaaactcttccaactgagctgcaaagcatatcattactcactgccctttcgaacaaccaacggatt 235  Q
    ||||||||||||||||||| | || ||||||||| || || ||||||||||||||||| ||| |||||||| ||||||||||    
T  26734196 taagattgaaattctcaaagcact-ccaactgagatgtaatgcatatcattactcacttcccattcgaacagccaacggatt 26734116  T

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Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 191 - 237
Target Start/End: Complemental strand, 26651281 - 26651235
Alignment:
Q  191 caaagcatatcattactcactgccctttcgaacaaccaacggattct 237  Q
    ||||||||| |||||||||||||||||||||||||||||| ||||||    
T  26651281 caaagcatagcattactcactgccctttcgaacaaccaacagattct 26651235  T

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Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 191 - 237
Target Start/End: Complemental strand, 26757249 - 26757203
Alignment:
Q  191 caaagcatatcattactcactgccctttcgaacaaccaacggattct 237  Q
    ||||||||| |||||||||||||||||||||||||||||| ||||||    
T  26757249 caaagcatagcattactcactgccctttcgaacaaccaacagattct 26757203  T

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Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 225
Target Start/End: Complemental strand, 26631641 - 26631597
Alignment:
Q  181 aactgagctgcaaagcatatcattactcactgccctttcgaacaa 225  Q
    ||||||||||| ||||||| |||||||||||||||||| ||||||    
T  26631641 aactgagctgcgaagcatagcattactcactgccctttggaacaa 26631597  T

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Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 225
Target Start/End: Complemental strand, 26737616 - 26737572
Alignment:
Q  181 aactgagctgcaaagcatatcattactcactgccctttcgaacaa 225  Q
    ||||||||||| ||||||| |||||||||||||||||| ||||||    
T  26737616 aactgagctgcgaagcatagcattactcactgccctttggaacaa 26737572  T

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Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 27586671 - 27586716
Alignment:
Q  180 caactgagctgcaaagcatatcattactcactgccctttcgaacaa 225  Q
    |||||||  |||||||||||||||||||||||||| |||| |||||    
T  27586671 caactgaattgcaaagcatatcattactcactgccatttcaaacaa 27586716  T

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Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 237
Target Start/End: Original strand, 27712634 - 27712691
Alignment:
Q  180 caactgagctgcaaagcatatcattactcactgccctttcgaacaaccaacggattct 237  Q
    |||||||  ||||||||||||||||||||| |||| |||| ||||| | |||||||||    
T  27712634 caactgaattgcaaagcatatcattactcagtgccatttcaaacaagccacggattct 27712691  T

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Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 237
Target Start/End: Complemental strand, 26966265 - 26966229
Alignment:
Q  201 cattactcactgccctttcgaacaaccaacggattct 237  Q
    ||||| || ||||||||||||||||||||||||||||    
T  26966265 cattattcgctgccctttcgaacaaccaacggattct 26966229  T

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Target: chr8 (Bit Score: 57; Significance: 7e-24; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 151 - 235
Target Start/End: Original strand, 29269934 - 29270017
Alignment:
Q  151 tactaagattgaaattctcaaaactcttccaactgagctgcaaagcatatcattactcactgccctttcgaacaaccaacggatt 235  Q
    ||||||||| ||||||| |||| | || |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  29269934 tactaagatggaaattcacaaagcact-ccaactgagctgcaaagcatatcattactcactgccctttcgaacaacaaacggatt 29270017  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 143
Target Start/End: Complemental strand, 26992337 - 26992284
Alignment:
Q  90 aataaaatttaattttcaaattcactcattcatcaagaaaactaacgcatcttc 143  Q
    |||||||||||||||||||||||||  ||||||| ||||||||||||| |||||    
T  26992337 aataaaatttaattttcaaattcacatattcatccagaaaactaacgcctcttc 26992284  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 114
Target Start/End: Complemental strand, 35980032 - 35979965
Alignment:
Q  47 tatgtatttacggttacatcctaaaataataaaacta-tcttcaaataaaatttaattttcaaattcac 114  Q
    |||||||||| |||||||||||||||| | |||| || |||| ||||||||||||||||||| ||||||    
T  35980032 tatgtatttatggttacatcctaaaatgacaaaattactctt-aaataaaatttaattttcatattcac 35979965  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 114
Target Start/End: Original strand, 44953023 - 44953109
Alignment:
Q  27 gaatttttctaattacactttatgtatttacggttacatcctaaaataataaaactatcttcaaataaaatttaattttcaaattcac 114  Q
    ||||||||||||| ||||  |||||||| | ||||||| | |||||| || ||| |||||| |||| |||||||||||| ||||||||    
T  44953023 gaatttttctaatcacaccctatgtattcatggttacaccttaaaatgat-aaattatctttaaatgaaatttaatttttaaattcac 44953109  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 104
Target Start/End: Original strand, 23482671 - 23482747
Alignment:
Q  28 aatttttctaattacactttatgtatttacggttacatcctaaaataataaaactatcttcaaataaaatttaattt 104  Q
    |||||||||||||||| || ||||||| | |||||||  ||||||| |||||| |||| | ||||||||||||||||    
T  23482671 aatttttctaattacatttcatgtattcatggttacacactaaaatgataaaattatccttaaataaaatttaattt 23482747  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 113
Target Start/End: Complemental strand, 45237147 - 45237102
Alignment:
Q  68 taaaataataaaactatcttcaaataaaatttaattttcaaattca 113  Q
    |||||| |||||| |||||| |||||||||||||||||||||||||    
T  45237147 taaaatgataaaattatctttaaataaaatttaattttcaaattca 45237102  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 133
Target Start/End: Original strand, 35005789 - 35005895
Alignment:
Q  26 agaatttttctaattacactttatgtatttacggttacatcctaaaataataaaactatcttcaaataaaatttaattttcaaattcactcattcatcaa 125  Q
    ||||||| ||||||||||||  || |||||  | ||||| |||||||| | |||  || ||| ||||||||| |||||||||||||||| |||||| | |    
T  35005789 agaatttgtctaattacactc-atatatttctgattacaccctaaaatcacaaatttacctttaaataaaatataattttcaaattcacccattcaccca 35005887  T
Q  126 gaaaacta 133  Q
    ||||||||    
T  35005888 gaaaacta 35005895  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 114
Target Start/End: Complemental strand, 43653647 - 43653563
Alignment:
Q  30 tttttctaattacactttatgtatttacggttacatcctaaaataataaaactatcttcaaataaaatttaattttcaaattcac 114  Q
    |||||||| |||||| |||| || ||   |||| |||||||||||| |||| |||||| ||||||||  | ||||||||||||||    
T  43653647 tttttctagttacaccttatttaatttttgttatatcctaaaataacaaaattatctttaaataaaaaattattttcaaattcac 43653563  T

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