View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7828_low_2 (Length: 541)
Name: NF7828_low_2
Description: NF7828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7828_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 500; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 18 - 525
Target Start/End: Original strand, 55372735 - 55373242
Alignment:
| Q |
18 |
ctcccaacaaaacaactcaatggacctgcattgagagttatagcaggtaccatataacctggaacagccacaaaagattgagcaggtgtataatttggtg |
117 |
Q |
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| T |
55372735 |
ctcccaacaaaacaactcaatggacctgcattgagagttatagcaggtaccatataacctggaacagccacaaaagattgagcaggtgtataatttggtg |
55372834 |
T |
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| Q |
118 |
cacaagttccatatccagatggtataaaataagcaccatttgaaaaataatccttagaagatctccatttccaactcttccaatttccctttgattccct |
217 |
Q |
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| T |
55372835 |
cacaacttccatatccagatggtataaaataagcaccatttgaaaaataatcctttgaagatctccatttccaactcttccaatttccctttgattccct |
55372934 |
T |
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| Q |
218 |
cttggtaatctgtcacacgtacaaaaataaataaccacaccaaagtcaatatcttaaatgattgaattatgaaattaattaaactatatattattcttaa |
317 |
Q |
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| T |
55372935 |
cttggtaatctgtcacacgtacaaaaataaataaccacaccaaagtcaatatcttaaatgattgaattatgaaattaattaaactatatattattcttaa |
55373034 |
T |
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| Q |
318 |
tactatgtttgtttttacctgttttttagtatggtcatttggtgcattataaaagttgccttcacttaaaatggttgggttagcacttcctcctatagca |
417 |
Q |
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| T |
55373035 |
tactatgtttgtttttacctgttttttagtatggtcatttggtgcattataaaagttgccttcacttaaaatggttgggttagcacttcctcctatagca |
55373134 |
T |
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| Q |
418 |
tacatttgccactgatcatatttgttgttcaccacatgagcataaccaaatcttaccctgcacattcatcaacaactcaatattttaatttatatatcat |
517 |
Q |
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| T |
55373135 |
tacatttgccactgatcatatttgttgttcaccacatgagcataaccaaatcttaccctgcacattcatcaacaactcaatattttaatttatatatcat |
55373234 |
T |
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| Q |
518 |
caaagtca |
525 |
Q |
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| T |
55373235 |
caaagtca |
55373242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 200 - 275
Target Start/End: Original strand, 35868632 - 35868704
Alignment:
| Q |
200 |
atttccctttga-ttccctcttggtaatctgtcacacgtacaaaaataaataaccacaccaaagtcaatatcttaaa |
275 |
Q |
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|||||||||| | |||||||||| ||||||||||||| || |||||||||||| ||| |||||||||||||||| |
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| T |
35868632 |
atttccctttaacttccctcttgataatctgtcacac----aagaataaataaccagacccaagtcaatatcttaaa |
35868704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 385 - 479
Target Start/End: Original strand, 8526154 - 8526248
Alignment:
| Q |
385 |
aaaatggttgggttagcacttcctcctatagcatacatttgccactgatcatatttgttgttcaccacatgagcataaccaaatcttaccctgca |
479 |
Q |
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|||||||| |||| |||||| || || || |||||||| ||||| ||| ||| |||||| || ||||| ||||||||||||||||||||||| |
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| T |
8526154 |
aaaatggtagggtcagcactaccaccaatggcatacatgatccactcatcgtatcggttgtttacaacatgggcataaccaaatcttaccctgca |
8526248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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