View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7828_low_5 (Length: 441)
Name: NF7828_low_5
Description: NF7828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7828_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 156; Significance: 1e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 217 - 426
Target Start/End: Complemental strand, 38028477 - 38028279
Alignment:
| Q |
217 |
atttaagataatagttctctacaacttgaaaacaatatttattaaaatgaaaaagatgtattatattttttgtacttatcagttatcaaacggaaagcat |
316 |
Q |
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| T |
38028477 |
atttgagataatagttctctacaccttgaaaacaatatttattaaaatgaaaaagatgtattatcg-----------atcagttatcaaacggaaagcat |
38028389 |
T |
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| Q |
317 |
ataggatccccatgttgttgaattctacatggtcctgacttgaatatattccaattgcaatcatcgcaattacttttacgtaaattactggcatggtaaa |
416 |
Q |
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| T |
38028388 |
ataggatccccatgttgttgaattctacatggtcctgacttgaatatattccaattgcaatcatcgcaattacttttacgtaaattactggcatggtaaa |
38028289 |
T |
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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 309 - 388
Target Start/End: Original strand, 30459517 - 30459596
Alignment:
| Q |
309 |
gaaagcatataggatccccatgttgttgaattctacatggtcctgacttgaatatattccaattgcaatcatcgcaatta |
388 |
Q |
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| T |
30459517 |
gaaagcaaatagggtccccatgttcctgaagtctacatggtcctgatttaaatacattccaattgcaataatcacaatta |
30459596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 388
Target Start/End: Original strand, 30447986 - 30448035
Alignment:
| Q |
339 |
ttctacatggtcctgacttgaatatattccaattgcaatcatcgcaatta |
388 |
Q |
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| T |
30447986 |
ttctacatggtcctgattcgaatacattccaattgcaataatcacaatta |
30448035 |
T |
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