View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7828_low_6 (Length: 355)

Name: NF7828_low_6
Description: NF7828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7828_low_6
NF7828_low_6
[»] chr4 (4 HSPs)
chr4 (108-240)||(1994792-1994924)
chr4 (112-230)||(1995446-1995564)
chr4 (159-207)||(13393236-13393284)
chr4 (159-207)||(13396375-13396423)
[»] chr1 (5 HSPs)
chr1 (108-230)||(45517917-45518039)
chr1 (108-190)||(45517358-45517440)
chr1 (159-240)||(29406790-29406871)
chr1 (143-202)||(50799432-50799491)
chr1 (143-240)||(45529257-45529354)
[»] chr6 (3 HSPs)
chr6 (108-229)||(28522465-28522586)
chr6 (112-206)||(28295147-28295245)
chr6 (112-206)||(28516828-28516926)
[»] chr5 (1 HSPs)
chr5 (159-236)||(34607076-34607153)
[»] chr8 (2 HSPs)
chr8 (295-339)||(30243784-30243828)
chr8 (143-240)||(8744214-8744311)
[»] chr3 (1 HSPs)
chr3 (154-231)||(16254946-16255023)
[»] chr7 (1 HSPs)
chr7 (143-240)||(23956551-23956648)


Alignment Details
Target: chr4 (Bit Score: 101; Significance: 5e-50; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 108 - 240
Target Start/End: Complemental strand, 1994924 - 1994792
Alignment:
Q  108 tatcaatgacaaatgactcactttatgaatgtttcaatctcaactattcctttttaatttgatggctcttattctttctcataattctcatataaaaatg 207  Q
    ||||||||||||||||||||||||| |||||||| |||||||||  |||||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  1994924 tatcaatgacaaatgactcactttaggaatgttttaatctcaaccgttcctttttaatttgatggctcttattcattctcatcattctcatataaaaatg 1994825  T
Q  208 gaattcttatagtatatgtcctctatatatata 240  Q
    | ||||| |||||||||||||||||||||||||    
T  1994824 gcattctcatagtatatgtcctctatatatata 1994792  T

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Target: chr4; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 112 - 230
Target Start/End: Original strand, 1995446 - 1995564
Alignment:
Q  112 aatgacaaatgactcactttatgaatgtttcaatctcaactattcctttttaatttgatggctcttattctttctcataattctcatataaaaatggaat 211  Q
    ||||||| ||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||  ||    
T  1995446 aatgacacatgactcactttaagaatgttttaatctcaaccattcctttttaatttgatggctcttattcattctcatcattctcatataaaaatgacat 1995545  T
Q  212 tcttatagtatatgtcctc 230  Q
    ||| |||||||||||||||    
T  1995546 tctcatagtatatgtcctc 1995564  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 207
Target Start/End: Original strand, 13393236 - 13393284
Alignment:
Q  159 ttttaatttgatggctcttattctttctcataattctcatataaaaatg 207  Q
    ||||||| ||||||||| || || ||||||| |||||||||||||||||    
T  13393236 ttttaatctgatggctcataatcattctcatcattctcatataaaaatg 13393284  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 207
Target Start/End: Original strand, 13396375 - 13396423
Alignment:
Q  159 ttttaatttgatggctcttattctttctcataattctcatataaaaatg 207  Q
    ||||||| ||||||||| || || ||||||| |||||||||||||||||    
T  13396375 ttttaatctgatggctcataatcattctcatcattctcatataaaaatg 13396423  T

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Target: chr1 (Bit Score: 71; Significance: 4e-32; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 108 - 230
Target Start/End: Original strand, 45517917 - 45518039
Alignment:
Q  108 tatcaatgacaaatgactcactttatgaatgtttcaatctcaactattcctttttaatttgatggctcttattctttctcataattctcatataaaaatg 207  Q
    |||||||||||||||||||| ||||| ||||||| ||||||||| ||| ||||||||||||||||||||||||| |||||||  ||||||||||||||||    
T  45517917 tatcaatgacaaatgactcattttataaatgttttaatctcaaccatttctttttaatttgatggctcttattcattctcatcgttctcatataaaaatg 45518016  T
Q  208 gaattcttatagtatatgtcctc 230  Q
      ||||| |||| ||||| ||||    
T  45518017 acattctcatagcatatgacctc 45518039  T

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Target: chr1; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 108 - 190
Target Start/End: Complemental strand, 45517440 - 45517358
Alignment:
Q  108 tatcaatgacaaatgactcactttatgaatgtttcaatctcaactattcctttttaatttgatggctcttattctttctcata 190  Q
    ||||||||||||||||||||||||| |||| ||| ||||| ||| ||||||||||||||||||||||||||||| ||||||||    
T  45517440 tatcaatgacaaatgactcactttaggaatcttttaatctgaacaattcctttttaatttgatggctcttattcattctcata 45517358  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 159 - 240
Target Start/End: Complemental strand, 29406871 - 29406790
Alignment:
Q  159 ttttaatttgatggctcttattctttctcataattctcatataaaaatggaattcttatagtatatgtcctctatatatata 240  Q
    ||||||| |||||||| | |||| ||||||| |||||||||||| ||||  ||||| |||  ||||||||| ||||||||||    
T  29406871 ttttaatctgatggctgtaattcattctcatcattctcatataagaatgtcattctcatatgatatgtcctatatatatata 29406790  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 143 - 202
Target Start/End: Complemental strand, 50799491 - 50799432
Alignment:
Q  143 aatctcaactattcctttttaatttgatggctcttattctttctcataattctcatataa 202  Q
    |||||||||  || ||||||||| |||||||||| |||| ||||||| ||||||||||||    
T  50799491 aatctcaaccctttctttttaatctgatggctctcattcattctcatcattctcatataa 50799432  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 240
Target Start/End: Original strand, 45529257 - 45529354
Alignment:
Q  143 aatctcaactattcctttttaatttgatggctcttattctttctcataattctcatataaaaatggaattcttatagtatatgtcctctatatatata 240  Q
    ||||||||| ||||||||||||| | ||| ||| ||||| ||||||| ||||| |||||| ||||  ||||| ||   |||  |||||||||||||||    
T  45529257 aatctcaaccattcctttttaatctaatgactcatattcattctcatcattcttatataacaatgacattctcatgtgatacatcctctatatatata 45529354  T

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Target: chr6 (Bit Score: 66; Significance: 4e-29; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 108 - 229
Target Start/End: Original strand, 28522465 - 28522586
Alignment:
Q  108 tatcaatgacaaatgactcactttatgaatgtttcaatctcaactattcctttttaatttgatggctcttattctttctcataattctcatataaaaatg 207  Q
    ||||||||| ||||||||||||||| |||||||| ||||||||| |||||||   ||| |||||||| |||||| ||||||| ||||||||| |||||||    
T  28522465 tatcaatgataaatgactcactttaggaatgttttaatctcaaccattccttaaaaatgtgatggcttttattcattctcatcattctcatacaaaaatg 28522564  T
Q  208 gaattcttatagtatatgtcct 229  Q
    | ||||| ||||||||||||||    
T  28522565 gcattctcatagtatatgtcct 28522586  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 112 - 206
Target Start/End: Original strand, 28295147 - 28295245
Alignment:
Q  112 aatgacaaatgactcactttatgaatgtttcaatctcaactattcctttttaatttgatg----gctcttattctttctcataattctcatataaaaat 206  Q
    ||||||||||||||||||||| |||||||| ||||||||| |||| ||   |||||||||    |||||||||| ||||||| ||||||||||||||||    
T  28295147 aatgacaaatgactcactttaggaatgttttaatctcaaccattcattaaaaatttgatggctagctcttattcattctcatcattctcatataaaaat 28295245  T

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Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 112 - 206
Target Start/End: Complemental strand, 28516926 - 28516828
Alignment:
Q  112 aatgacaaatgactcactttatgaatgtttcaatctcaactattcctttttaatttgatg----gctcttattctttctcataattctcatataaaaat 206  Q
    ||||||||||||||||||||| |||||||| ||||||||| |||| ||   |||||||||    |||||||||| ||||||| ||||||||||||||||    
T  28516926 aatgacaaatgactcactttaggaatgttttaatctcaaccattcattaaaaatttgatggctagctcttattcattctcatcattctcatataaaaat 28516828  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 236
Target Start/End: Complemental strand, 34607153 - 34607076
Alignment:
Q  159 ttttaatttgatggctcttattctttctcataattctcatataaaaatggaattcttatagtatatgtcctctatata 236  Q
    |||||||||||||||| | |||| ||||||| |||||||||||| ||||  ||||| |||  ||||||||||||||||    
T  34607153 ttttaatttgatggctgtaattcattctcatcattctcatataagaatgtcattctcatatgatatgtcctctatata 34607076  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 295 - 339
Target Start/End: Original strand, 30243784 - 30243828
Alignment:
Q  295 cctaatactcgttttcttgttggatgaaattcatgtagatttcac 339  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||    
T  30243784 cctaatactcattttcttgttggatgaaattcatgtggatttcac 30243828  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 143 - 240
Target Start/End: Original strand, 8744214 - 8744311
Alignment:
Q  143 aatctcaactattcctttttaatttgatggctcttattctttctcataattctcatataaaaatggaattcttatagtatatgtcctctatatatata 240  Q
    |||||||||  || ||||||||| |||||||||| |||| ||||||| |||||||||||| ||||  ||||| | |  ||||| ||| ||||||||||    
T  8744214 aatctcaaccctttctttttaatctgatggctctcattcattctcatcattctcatataagaatgtcattctcacatgatatgccctatatatatata 8744311  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 154 - 231
Target Start/End: Original strand, 16254946 - 16255023
Alignment:
Q  154 ttcctttttaatttgatggctcttattctttctcataattctcatataaaaatggaattcttatagtatatgtcctct 231  Q
    |||||||| ||| |||||| |  ||||| ||||||| ||||||||||| |||||| ||||| ||||||||||| ||||    
T  16254946 ttccttttgaatctgatggtttatattcattctcatcattctcatatagaaatggcattctcatagtatatgttctct 16255023  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 240
Target Start/End: Original strand, 23956551 - 23956648
Alignment:
Q  143 aatctcaactattcctttttaatttgatggctcttattctttctcataattctcatataaaaatggaattcttatagtatatgtcctctatatatata 240  Q
    ||||||||  ||||||||||||| | |||  || ||||| ||||||| |||||||||||| || |  ||| | |||||||||||||||| | ||||||    
T  23956551 aatctcaatcattcctttttaatctaatgattcatattcattctcatcattctcatataacaaagtcattatcatagtatatgtcctctctctatata 23956648  T

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