View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7829A_high_17 (Length: 351)

Name: NF7829A_high_17

Description: NF7829A

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF7829A_high_17

[»] chr8 (2 HSPs)

Target: chr8 (Bit Score: 121; Significance: 6e-62; HSPs: 2)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 121; E-Value: 6e-62

Query Start/End: Original strand, 130 - 307

Target Start/End: Original strand, 4664155 - 4664328

Alignment:

Q	130	tcaacatacatgaaactacagtctcaaatcaataagaaggttccaacagtgtcgattgcaagagtttctccaagcaccaaccaatggtggagaaccgtgc	229	Q
		\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|
T	4664155	tcaacatacatcaaactacagtctcaaatcaataagaaggtttcaacagtgtcgattgcaagagttcctccaagcaccga----tggtggagaactgtgc	4664250	T

Q	230	accaaaagatctcgatcagaagaagcaatgagtttaaccatgaagtcttcacaatagttacctttgtgaagggtataa	307	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|
T	4664251	accaaaagatctcgatcggaagaagcaacgagcttaaccatgaagtcttcacaatagttgcctttgtgaaggatataa	4664328	T

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Target: chr8; HSP #2

Raw Score: 30; E-Value: 0.0000001

Query Start/End: Original strand, 19 - 63

Target Start/End: Original strand, 4664047 - 4664094

Alignment:

Q	19	atcatttaccttttaaccaaccac---aatttctttttgttacaaggc	63	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	4664047	atcatttaccttttaaccaaccacttgattttctttttgttacaaggc	4664094	T

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