View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_high_22 (Length: 324)
Name: NF7829A_high_22
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_high_22 |
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Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 19 - 323
Target Start/End: Original strand, 5826987 - 5827291
Alignment:
| Q |
19 |
atcaaaactttcaaactaagctggttgagacaacagatgggtttggttggtcaagagcctattcttttcaacgaaagcattcgtgccaacatagcttatg |
118 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5826987 |
atcaaaactttcaaactaagctggttgagacaacaaatgggtttggttggtcaagagcctattcttttcaacgaaagcattcgtgccaacatagcttatg |
5827086 |
T |
|
| Q |
119 |
gcaaagaaggaggtgctacggaggatgagataattgcagcagctaacgcagccaatgcacacaactttataagctctcttccaggtggttacaatacatc |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |
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| T |
5827087 |
gcaaagaaggaggtgctacggaggatgagataattgcagcagctaacgcagccaatgcacacaacttcataagctctcttccaggtggttacaatacttc |
5827186 |
T |
|
| Q |
219 |
ggtaggcgaaagaggcacacagttatcaggtggacaaaaacaacgtatagcaattgcaagagctatattgaaaaaccctagaatacttttacttgatgag |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5827187 |
ggtaggcgaaagaggcacacagttatcaggtggacaaaaacaacgtatagcaattgcaagagctatattgaaaaaccctagaatacttttacttgatgag |
5827286 |
T |
|
| Q |
319 |
gcaac |
323 |
Q |
| |
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||||| |
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| T |
5827287 |
gcaac |
5827291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 22 - 320
Target Start/End: Original strand, 5768537 - 5768835
Alignment:
| Q |
22 |
aaaactttcaaactaagctggttgagacaacagatgggtttggttggtcaagagcctattcttttcaacgaaagcattcgtgccaacatagcttatggca |
121 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5768537 |
aaaactttcagactaagctggttgagacaacagatgggtttggttggtcaagagcctattcttttcaacgaaagcattcgtgccaacatagcttatggca |
5768636 |
T |
|
| Q |
122 |
aagaaggaggtgctacggaggatgagataattgcagcagctaacgcagccaatgcacacaactttataagctctcttccaggtggttacaatacatcggt |
221 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||| |||||| | || || || |
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| T |
5768637 |
aagaaggaggtgctatggaggatgagataattgcagcagctaaagcagccaatgcacacaatttcataagctctcttccaaatggttatgacacctctgt |
5768736 |
T |
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| Q |
222 |
aggcgaaagaggcacacagttatcaggtggacaaaaacaacgtatagcaattgcaagagctatattgaaaaaccctagaatacttttacttgatgaggc |
320 |
Q |
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|| ||||||||||||||| ||||||| ||||| || || ||||| || ||||||||||| || |||||||||| | ||||||||| ||||| ||||| |
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| T |
5768737 |
cggggaaagaggcacacagctatcaggaggacagaagcagcgtattgctattgcaagagccatgctgaaaaaccccaaaatacttttgcttgacgaggc |
5768835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 20 - 320
Target Start/End: Complemental strand, 5829913 - 5829613
Alignment:
| Q |
20 |
tcaaaactttcaaactaagctggttgagacaacagatgggtttggttggtcaagagcctattcttttcaacgaaagcattcgtgccaacatagcttatgg |
119 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
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| T |
5829913 |
tcaaaactttcagattaagctggttgagacaacaaatggggttggttggtcaagagcctattcttttcaacgaaagcattcgtgctaacataggttatgg |
5829814 |
T |
|
| Q |
120 |
caaagaaggaggtgctacggaggatgagataattgcagcagctaacgcagccaatgcacacaactttataagctctcttccaggtggttacaatacatcg |
219 |
Q |
| |
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|||||||| |||||||| ||||||||||| |||||||||||||||||||| |||||||||| ||| ||||| |||||||| ||| || | || || |
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| T |
5829813 |
aaaagaagggggtgctacagaggatgagatcattgcagcagctaacgcagcaaatgcacacagcttcataagtaatcttccagatggatatgacacgtct |
5829714 |
T |
|
| Q |
220 |
gtaggcgaaagaggcacacagttatcaggtggacaaaaacaacgtatagcaattgcaagagctatattgaaaaaccctagaatacttttacttgatgagg |
319 |
Q |
| |
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|| || ||||||||||| || | || || ||||| || || || || || ||||||||| | || | |||||||| | ||||||||| |||||||||| |
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| T |
5829713 |
gttggagaaagaggcacgcaactgtccggaggacagaagcagcgcattgctattgcaagaaccatgctaaaaaaccccaaaatacttttgcttgatgagg |
5829614 |
T |
|
| Q |
320 |
c |
320 |
Q |
| |
|
| |
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| T |
5829613 |
c |
5829613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 225 - 323
Target Start/End: Original strand, 5794793 - 5794883
Alignment:
| Q |
225 |
cgaaagaggcacacagttatcaggtggacaaaaacaacgtatagcaattgcaagagctatattgaaaaaccctagaatacttttacttgatgaggcaac |
323 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
5794793 |
cgaaagaggcacacagttaccaggtggacaaaaacaatgt--------tgcaagagctatattgaaagaccctagaatacttttacttgatgaggcaac |
5794883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 166; Significance: 8e-89; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 14 - 323
Target Start/End: Complemental strand, 29327433 - 29327124
Alignment:
| Q |
14 |
tggacatcaaaactttcaaactaagctggttgagacaacagatgggtttggttggtcaagagcctattcttttcaacgaaagcattcgtgccaacatagc |
113 |
Q |
| |
|
|||| ||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
29327433 |
tggatatcaaaactttcagaataagctggttgagacaacaaatgggtttggttggtcaagagcctattcttttcaacgaaagcattcgcgccaacatagc |
29327334 |
T |
|
| Q |
114 |
ttatggcaaagaaggaggtgctacggaggatgagataattgcagcagctaacgcagccaatgcacacaactttataagctctcttccaggtggttacaat |
213 |
Q |
| |
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|||||| ||||||| |||||||||||||||||||| || |||||||| ||||||||||||||||||||||| ||||| |||||||| | |||||| | |
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| T |
29327333 |
ttatggtaaagaagatggtgctacggaggatgagatcatagcagcagcgaacgcagccaatgcacacaacttcataagttctcttcctgatggttatgac |
29327234 |
T |
|
| Q |
214 |
acatcggtaggcgaaagaggcacacagttatcaggtggacaaaaacaacgtatagcaattgcaagagctatattgaaaaaccctagaatacttttacttg |
313 |
Q |
| |
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|| || || ||||||||||||||||| |||| || ||||| || || || || || ||||||||||| || |||||||||||| ||||||||| |||| |
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| T |
29327233 |
acttctgttggcgaaagaggcacacaactatctggaggacagaagcagcgcattgcgattgcaagagccatgctgaaaaaccctaaaatacttttgcttg |
29327134 |
T |
|
| Q |
314 |
atgaggcaac |
323 |
Q |
| |
|
|||||||||| |
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| T |
29327133 |
atgaggcaac |
29327124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 293
Target Start/End: Complemental strand, 3431268 - 3431216
Alignment:
| Q |
241 |
ttatcaggtggacaaaaacaacgtatagcaattgcaagagctatattgaaaaa |
293 |
Q |
| |
|
||||| ||||||||||| ||| | || ||||||||||||||||| |||||||| |
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|
| T |
3431268 |
ttatctggtggacaaaagcaaaggattgcaattgcaagagctatgttgaaaaa |
3431216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 275
Target Start/End: Complemental strand, 17872447 - 17872391
Alignment:
| Q |
219 |
ggtaggcgaaagaggcacacagttatcaggtggacaaaaacaacgtatagcaattgc |
275 |
Q |
| |
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|||||| |||||||| | || ||||||||||||||||||||| | ||||||||||| |
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| T |
17872447 |
ggtaggagaaagagggattcaattatcaggtggacaaaaacaaagaatagcaattgc |
17872391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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