View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7829A_high_34 (Length: 254)

Name: NF7829A_high_34
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7829A_high_34
NF7829A_high_34
[»] chr5 (4 HSPs)
chr5 (71-243)||(11336209-11336381)
chr5 (71-176)||(43379448-43379553)
chr5 (11-59)||(11336399-11336449)
chr5 (71-176)||(43378572-43378677)
[»] chr6 (4 HSPs)
chr6 (71-110)||(13208225-13208264)
chr6 (73-131)||(3163534-3163592)
chr6 (188-230)||(10740746-10740788)
chr6 (71-176)||(13207346-13207451)
[»] chr2 (3 HSPs)
chr2 (77-124)||(3466658-3466705)
chr2 (178-243)||(8985740-8985805)
chr2 (71-124)||(39062863-39062916)
[»] chr8 (1 HSPs)
chr8 (96-162)||(3582072-3582138)
[»] chr7 (3 HSPs)
chr7 (71-124)||(35752377-35752430)
chr7 (178-243)||(46964298-46964363)
chr7 (76-124)||(46294693-46294741)
[»] chr4 (1 HSPs)
chr4 (178-243)||(16869676-16869741)
[»] chr3 (1 HSPs)
chr3 (108-176)||(40613800-40613868)


Alignment Details
Target: chr5 (Bit Score: 145; Significance: 2e-76; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 71 - 243
Target Start/End: Complemental strand, 11336381 - 11336209
Alignment:
Q  71 caaaccttttaatcctaacccttgcttttatgtttgtcacatgtcatacatctaaaaactggaccgggaaaaatggaggcttcctgaatggaagaaagat 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||| |||||||||||||||| ||||||||||||||    
T  11336381 caaaccttttaatcctaacccttgcttttatgtttgtcacatgtcacacacctaaaagctggaccggggaaaatggaggcttcctaaatggaagaaagat 11336282  T
Q  171 gaactcgtatatttgtgttgtttacatggtatcaagagcatggtttgattcttcttgaattactcgtcgcttc 243  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  11336281 gaactcgtgtatttgtgttgtttacatggtatcaagagcatggtttgattcttcttaaattactcgtcgcttc 11336209  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 71 - 176
Target Start/End: Original strand, 43379448 - 43379553
Alignment:
Q  71 caaaccttttaatcctaacccttgcttttatgtttgtcacatgtcatacatctaaaaactggaccgggaaaaatggaggcttcctgaatggaagaaagat 170  Q
    ||||||||||||||| ||||||||||||||| |||| ||||||||| |||||||| | |||||  |||| |||||||| |||| | ||||||  ||||||    
T  43379448 caaaccttttaatcccaacccttgcttttatttttgccacatgtcacacatctaagagctggaatgggataaatggagccttcataaatggagcaaagat 43379547  T
Q  171 gaactc 176  Q
    ||||||    
T  43379548 gaactc 43379553  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 11336449 - 11336399
Alignment:
Q  11 cagagagaagagaagaggagacgcacgtgtaggcttttt--tgttcatcta 59  Q
    |||||||||||||||||||||||| ||||||||||||||  ||||||||||    
T  11336449 cagagagaagagaagaggagacgcgcgtgtaggcttttttgtgttcatcta 11336399  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 71 - 176
Target Start/End: Complemental strand, 43378677 - 43378572
Alignment:
Q  71 caaaccttttaatcctaacccttgcttttatgtttgtcacatgtcatacatctaaaaactggaccgggaaaaatggaggcttcctgaatggaagaaagat 170  Q
    ||||||||||||||  ||||||||||||||| |||| ||| ||||| |||||||| | || ||  |||  |||||||| |||| | ||||||  ||||||    
T  43378677 caaaccttttaatctcaacccttgcttttatttttgccacgtgtcacacatctaagagctagaatggggtaaatggagccttcataaatggagcaaagat 43378578  T
Q  171 gaactc 176  Q
    ||||||    
T  43378577 gaactc 43378572  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 71 - 110
Target Start/End: Original strand, 13208225 - 13208264
Alignment:
Q  71 caaaccttttaatcctaacccttgcttttatgtttgtcac 110  Q
    ||||||||||||||| ||||||||||||||| ||||||||    
T  13208225 caaaccttttaatcccaacccttgcttttatttttgtcac 13208264  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 131
Target Start/End: Complemental strand, 3163592 - 3163534
Alignment:
Q  73 aaccttttaatcctaacccttgcttttatgtttgtcacatgtcatacatctaaaaactg 131  Q
    |||||||| ||||||||||||| |||||| |||| ||||||||  ||||||| ||||||    
T  3163592 aaccttttgatcctaacccttggttttatttttgacacatgtcgcacatctataaactg 3163534  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 230
Target Start/End: Original strand, 10740746 - 10740788
Alignment:
Q  188 ttgtttacatggtatcaagagcatggtttgattcttcttgaat 230  Q
    ||||| |||||||||||||||||||||||||| || |||||||    
T  10740746 ttgttaacatggtatcaagagcatggtttgatcctccttgaat 10740788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 71 - 176
Target Start/End: Complemental strand, 13207451 - 13207346
Alignment:
Q  71 caaaccttttaatcctaacccttgcttttatgtttgtcacatgtcatacatctaaaaactggaccgggaaaaatggaggcttcctgaatggaagaaagat 170  Q
    |||| |||||||||  ||||||||||||||| |||| ||| ||||| |||||||| | |||||  |||  ||||| || |||| | ||||||  ||||||    
T  13207451 caaatcttttaatctcaacccttgcttttatttttgccacgtgtcacacatctaagagctggaatggggtaaatgtagccttcgtaaatggagtaaagat 13207352  T
Q  171 gaactc 176  Q
    ||||||    
T  13207351 gaactc 13207346  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 77 - 124
Target Start/End: Complemental strand, 3466705 - 3466658
Alignment:
Q  77 ttttaatcctaacccttgcttttatgtttgtcacatgtcatacatcta 124  Q
    |||||||||||||||||| |||||| ||||||| |||||| |||||||    
T  3466705 ttttaatcctaacccttgattttatttttgtcatatgtcacacatcta 3466658  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 243
Target Start/End: Original strand, 8985740 - 8985805
Alignment:
Q  178 tatatttgtgttgtttacatggtatcaagagcatggtttgattcttcttgaattactcgtcgcttc 243  Q
    ||||| ||| ||||| |||||||||||||||| ||||||||  || ||||| ||| ||||||||||    
T  8985740 tatatctgtattgttaacatggtatcaagagcgtggtttgaccctccttgatttagtcgtcgcttc 8985805  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 71 - 124
Target Start/End: Original strand, 39062863 - 39062916
Alignment:
Q  71 caaaccttttaatcctaacccttgcttttatgtttgtcacatgtcatacatcta 124  Q
    ||||||||||||||||| || ||| ||||||  ||| |||||||||||||||||    
T  39062863 caaaccttttaatcctagccattgattttattgttgccacatgtcatacatcta 39062916  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 162
Target Start/End: Original strand, 3582072 - 3582138
Alignment:
Q  96 ttttatgtttgtcacatgtcatacatctaaaaactggaccgggaaaaatggaggcttcctgaatgga 162  Q
    |||||| ||| |||||||||||||||||||||| | |||  ||| |||| |||||||||| ||||||    
T  3582072 ttttatttttctcacatgtcatacatctaaaaaatagacatggataaatagaggcttcctaaatgga 3582138  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 71 - 124
Target Start/End: Complemental strand, 35752430 - 35752377
Alignment:
Q  71 caaaccttttaatcctaacccttgcttttatgtttgtcacatgtcatacatcta 124  Q
    ||||||||||||||  |||| ||| |||||| |||| |||||||||||||||||    
T  35752430 caaaccttttaatcacaaccattgattttatttttgccacatgtcatacatcta 35752377  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 243
Target Start/End: Complemental strand, 46964363 - 46964298
Alignment:
Q  178 tatatttgtgttgtttacatggtatcaagagcatggtttgattcttcttgaattactcgtcgcttc 243  Q
    ||||| ||| ||||| |||||||||||||||| ||||||||  || ||||| ||| ||||||||||    
T  46964363 tatatctgtattgttaacatggtatcaagagcgtggtttgaccctccttgatttagtcgtcgcttc 46964298  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 46294741 - 46294693
Alignment:
Q  76 cttttaatcctaacccttgcttttatgtttgtcacatgtcatacatcta 124  Q
    ||||||||||||||||||| ||||||  |||||| |||||| |||||||    
T  46294741 cttttaatcctaacccttgattttattattgtcatatgtcacacatcta 46294693  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 243
Target Start/End: Original strand, 16869676 - 16869741
Alignment:
Q  178 tatatttgtgttgtttacatggtatcaagagcatggtttgattcttcttgaattactcgtcgcttc 243  Q
    ||||| ||| ||||| |||||||||||||||| ||||||||  || ||||| ||| ||||||||||    
T  16869676 tatatctgtattgttaacatggtatcaagagcgtggtttgaccctccttgatttagtcgtcgcttc 16869741  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 176
Target Start/End: Original strand, 40613800 - 40613868
Alignment:
Q  108 cacatgtcatacatctaaaaactggaccgggaaaaatggaggcttcctgaatggaagaaagatgaactc 176  Q
    ||||||||| ||||||| ||| || || |||| |||||||||||| || ||||||  ||||||||||||    
T  40613800 cacatgtcagacatctacaaaatgaacagggataaatggaggcttgctaaatggagcaaagatgaactc 40613868  T

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