View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_high_38 (Length: 246)
Name: NF7829A_high_38
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_high_38 |
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Alignment Details
Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 135 - 223
Target Start/End: Original strand, 24142768 - 24142856
Alignment:
| Q |
135 |
tgtagaatcttaccacatgaagatggtattgggtgagcacaaacacgtcattcaggccaccatgatagtcatgaagctgttgaggctcc |
223 |
Q |
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| T |
24142768 |
tgtagaatcttaccacatgaagatggtattgggtgagcacaaacacgtcatttaggccaccatgatagtcatgaagctgttgaggctcc |
24142856 |
T |
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Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 39 - 104
Target Start/End: Original strand, 24142670 - 24142735
Alignment:
| Q |
39 |
ttaatatcatgatacgattcactttagtttacacaaataaaaataaacatagccttcagattacat |
104 |
Q |
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| T |
24142670 |
ttaatatcatgatacgattcacgttagtttacacaaataaaaataaacatagccttcagcttacat |
24142735 |
T |
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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 104
Target Start/End: Complemental strand, 16362953 - 16362888
Alignment:
| Q |
39 |
ttaatatcatgatacgattcactttagtttacacaaataaaaataaacatagccttcagattacat |
104 |
Q |
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| T |
16362953 |
ttaatatcatgatatgattcaattcagtttacataaataaaaataatcatagcattcagtttacat |
16362888 |
T |
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Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 9030758 - 9030704
Alignment:
| Q |
50 |
atacgattcactttagtttacacaaataaaaataaacatagccttcagattacat |
104 |
Q |
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| T |
9030758 |
atacgattcaatccagtttacaaaaataaaaataaacatagccttcagcttacat |
9030704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 94
Target Start/End: Complemental strand, 1771830 - 1771775
Alignment:
| Q |
39 |
ttaatatcatgatacgattcactttagtttacacaaataaaaataaacatagcctt |
94 |
Q |
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| T |
1771830 |
ttaatatcatgacacgattcagtttagtttacttatataaaattaaacatagcctt |
1771775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 9030680 - 9030630
Alignment:
| Q |
54 |
gattcactttagtttacacaaataaaaataaacatagccttcagattacat |
104 |
Q |
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| T |
9030680 |
gattcaattcagtttacataaataaaaataaacataaccttcagtttacat |
9030630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 184
Target Start/End: Complemental strand, 9030564 - 9030527
Alignment:
| Q |
147 |
ccacatgaagatggtattgggtgagcacaaacacgtca |
184 |
Q |
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| T |
9030564 |
ccacatgaagatggtattgggtgagcacagacaagtca |
9030527 |
T |
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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 89
Target Start/End: Complemental strand, 42229494 - 42229445
Alignment:
| Q |
40 |
taatatcatgatacgattcactttagtttacacaaataaaaataaacata |
89 |
Q |
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| T |
42229494 |
taatagcatgatacgattcagttaagtttacataaataaaaataaacata |
42229445 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 96
Target Start/End: Complemental strand, 5979524 - 5979492
Alignment:
| Q |
64 |
agtttacacaaataaaaataaacatagccttca |
96 |
Q |
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| T |
5979524 |
agtttacataaataaaaataaacatagccttca |
5979492 |
T |
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