View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_high_4 (Length: 581)
Name: NF7829A_high_4
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 14 - 554
Target Start/End: Complemental strand, 52708970 - 52708427
Alignment:
| Q |
14 |
gatggacatcagcaataaggtgtgggatattgcggtgttactgcgacatgttatgtcactgatggtgaattcgagaaataggccaagttcacttgattca |
113 |
Q |
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| T |
52708970 |
gatgggcatcagcaataaggtgtgggatattgcggtgttactgcgacatgttatgtcactgatggtgaattcgagaaataggccaagttcccttgattcc |
52708871 |
T |
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| Q |
114 |
actcatgcctaggcatgtagttgttgtcattgactttttaactaggtgttagatctatgtaaccttccagtttgattaataataataataacttaaattt |
213 |
Q |
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| T |
52708870 |
actcatgcctaggcatgtagttgttgttattgactctttaactaggtgttagatctatgtaacattcaagtttgattaataataataataacttaaattt |
52708771 |
T |
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| Q |
214 |
taggtaattatggttgactaacatgcatttagtatgtatagcagccagcaacccctaacagtnnnnnnnnnnnnnnnnnnngatttacatgcaacggatt |
313 |
Q |
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| T |
52708770 |
taggtaattatggttgactaacatgcatttagtatgtatagcagccagcaaccactaacagtaaaaaaaaataaaaaaaaa-aattacatgcaacggatt |
52708672 |
T |
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| Q |
314 |
gcaagtgaagaagttggggtaatttgaatgcaagtagtagaaattaccctgtaactattgtattcctctttaaccttaagctgaacatccttgcgagagg |
413 |
Q |
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| T |
52708671 |
ggaagtgaagaagttgaggtaatttgaatgcaagtagtagaaattaccctgtaactgttgtattcctctttaaccttaagctgaacatccttgcgagagg |
52708572 |
T |
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| Q |
414 |
cacgaacattaattggacccaaaaacatcctgagaaacttacctaaatgaaagaaattannnnnnnnnnnnnnnnnnnnattagtggaagtaattaatt- |
512 |
Q |
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| T |
52708571 |
cacgaacattaattggacccaaaaacatcctgagaaacttacctaaatgaaagaaattaatgatgatgatgatgaatgaattggtggaagtaattaatta |
52708472 |
T |
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| Q |
513 |
---aagaaagaaagaaaccttgagcatgtccaggaaggaggtaag |
554 |
Q |
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| T |
52708471 |
agaaagaaagaaagaaaccttgagcatgtccaggaaggaggtaag |
52708427 |
T |
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