View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7829A_high_9 (Length: 441)

Name: NF7829A_high_9
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7829A_high_9
NF7829A_high_9
[»] chr6 (31 HSPs)
chr6 (205-439)||(31290147-31290370)
chr6 (23-207)||(31290408-31290598)
chr6 (211-259)||(26952498-26952546)
chr6 (211-259)||(26961991-26962039)
chr6 (211-259)||(26980289-26980337)
chr6 (33-98)||(2820373-2820438)
chr6 (222-259)||(26649356-26649393)
chr6 (222-259)||(26755324-26755361)
chr6 (162-207)||(27608250-27608295)
chr6 (162-207)||(27715637-27715682)
chr6 (45-117)||(5970098-5970170)
chr6 (45-117)||(15443692-15443764)
chr6 (160-207)||(26058891-26058938)
chr6 (160-207)||(26078861-26078908)
chr6 (47-118)||(32313403-32313474)
chr6 (60-118)||(8931591-8931649)
chr6 (59-117)||(9195744-9195802)
chr6 (59-117)||(9617445-9617503)
chr6 (59-117)||(16766708-16766766)
chr6 (56-105)||(10335378-10335427)
chr6 (48-117)||(25038061-25038130)
chr6 (60-117)||(26562701-26562758)
chr6 (173-206)||(26876539-26876572)
chr6 (56-101)||(29449689-29449734)
chr6 (46-99)||(34625732-34625785)
chr6 (47-107)||(7377978-7378038)
chr6 (59-111)||(9025490-9025542)
chr6 (59-107)||(9629394-9629442)
chr6 (45-117)||(10760832-10760903)
chr6 (47-107)||(20371110-20371170)
chr6 (49-117)||(21395298-21395365)
[»] chr1 (14 HSPs)
chr1 (35-166)||(264591-264724)
chr1 (59-117)||(44482241-44482299)
chr1 (45-105)||(14332406-14332465)
chr1 (51-95)||(23605132-23605176)
chr1 (47-90)||(17080898-17080941)
chr1 (47-117)||(5376490-5376560)
chr1 (49-111)||(6427351-6427413)
chr1 (348-378)||(18008612-18008642)
chr1 (59-117)||(25361897-25361955)
chr1 (59-113)||(34712377-34712431)
chr1 (54-100)||(43609825-43609871)
chr1 (45-90)||(21057780-21057825)
chr1 (61-105)||(40158412-40158456)
chr1 (47-107)||(41877470-41877530)
[»] scaffold0022 (1 HSPs)
scaffold0022 (44-111)||(99889-99956)
[»] chr5 (14 HSPs)
chr5 (59-117)||(22423802-22423860)
chr5 (54-112)||(4991372-4991429)
chr5 (44-113)||(38749557-38749626)
chr5 (68-111)||(16374338-16374381)
chr5 (47-117)||(3966502-3966572)
chr5 (47-117)||(18592072-18592142)
chr5 (59-117)||(21522761-21522819)
chr5 (59-117)||(21533327-21533385)
chr5 (49-111)||(43208270-43208332)
chr5 (49-110)||(36838544-36838605)
chr5 (60-113)||(41558648-41558701)
chr5 (47-115)||(6035482-6035549)
chr5 (59-107)||(8420038-8420086)
chr5 (85-117)||(37328834-37328866)
[»] chr3 (8 HSPs)
chr3 (56-161)||(45382751-45382858)
chr3 (47-118)||(16192739-16192810)
chr3 (49-117)||(8039825-8039893)
chr3 (44-95)||(19323460-19323511)
chr3 (48-103)||(28576716-28576771)
chr3 (45-107)||(35990525-35990587)
chr3 (48-113)||(3185242-3185306)
chr3 (53-101)||(27097065-27097113)
[»] chr7 (12 HSPs)
chr7 (59-117)||(6028636-6028694)
chr7 (59-112)||(7328686-7328739)
chr7 (59-120)||(7438717-7438778)
chr7 (50-113)||(31808503-31808566)
chr7 (56-103)||(43160492-43160539)
chr7 (59-113)||(17307904-17307958)
chr7 (59-117)||(24339653-24339711)
chr7 (48-113)||(16341496-16341561)
chr7 (47-116)||(32308119-32308188)
chr7 (59-111)||(12843171-12843223)
chr7 (59-111)||(27945052-27945104)
chr7 (48-116)||(38134397-38134465)
[»] chr2 (4 HSPs)
chr2 (59-105)||(44605141-44605187)
chr2 (45-107)||(31026692-31026754)
chr2 (48-116)||(40681982-40682050)
chr2 (48-116)||(44860320-44860388)
[»] scaffold0349 (1 HSPs)
scaffold0349 (162-207)||(16263-16308)
[»] chr8 (11 HSPs)
chr8 (48-107)||(12985392-12985451)
chr8 (59-117)||(22651987-22652045)
chr8 (169-207)||(29270983-29271021)
chr8 (59-117)||(29447100-29447158)
chr8 (56-110)||(31681827-31681881)
chr8 (46-111)||(31548289-31548354)
chr8 (59-126)||(9382983-9383048)
chr8 (48-111)||(13650755-13650819)
chr8 (48-111)||(13709398-13709462)
chr8 (59-107)||(13844596-13844644)
chr8 (124-164)||(31105813-31105853)
[»] chr4 (7 HSPs)
chr4 (59-118)||(24613690-24613749)
chr4 (47-117)||(35723374-35723445)
chr4 (44-95)||(44796974-44797025)
chr4 (34-72)||(18727855-18727893)
chr4 (59-120)||(4383379-4383439)
chr4 (48-113)||(18513235-18513300)
chr4 (47-107)||(8423718-8423778)
[»] scaffold0123 (1 HSPs)
scaffold0123 (60-116)||(44516-44572)


Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 31)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 205 - 439
Target Start/End: Complemental strand, 31290370 - 31290147
Alignment:
Q  205 tgtcagtatcaaacactatatattgcaagataaaacaacaactaacctgactcaaaattacaccatgagcaaaattagcttatatagtgagcatacaagt 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31290370 tgtcagtatcaaacactatatattgcaagataaaacaacaactaacctgactcaaaattacaccatgagcaaaattagcttatatagtgagcatacaagt 31290271  T
Q  305 actagtaaaatagaatgtactactctatagtactacactaagataacttgtactacaagttatctatctaagctatataatatcctcattttgttcacgg 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||||| ||| ||    
T  31290270 actagtaaaatagaatgtactactctatagtactacactaagataacttgta-----------ctatctaagctatataatatcctcattttgctcatgg 31290182  T
Q  405 tgtaatagtctccattgaagagaaagaatgctatt 439  Q
    ||||||||||||||| |||||||||||||||||||    
T  31290181 tgtaatagtctccatagaagagaaagaatgctatt 31290147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 23 - 207
Target Start/End: Complemental strand, 31290598 - 31290408
Alignment:
Q  23 aaattaacattgacattgatttgtcgacaccgatagtaatttgagaaaataacataaatgaatgta------attacatatgtcggtgtcgtgtcggtgt 116  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||| |||||||||    
T  31290598 aaattaacattgacattgattcgtcgacaccgatagtaatttgagaaaataacataaatgaatgtatacgtaattacatatgtcggtgtcatgtcggtgt 31290499  T
Q  117 caaatacacacatgttggacaccagacacgccttcaatgagaagtgtttgggaattgaatataggtgcctccagcctcatgtagtttctgt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  31290498 caaatacacacatgttggacaccagacacgccttcaatgagaagtgtttgggaattgaatacaggtgcctcgagcctcatgtagtttctgt 31290408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 211 - 259
Target Start/End: Complemental strand, 26952546 - 26952498
Alignment:
Q  211 tatcaaacactatatattgcaagataaaacaacaactaacctgactcaa 259  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  26952546 tatcaaatactatatattgcaagataaaacaacaacaaacctgactcaa 26952498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 211 - 259
Target Start/End: Complemental strand, 26962039 - 26961991
Alignment:
Q  211 tatcaaacactatatattgcaagataaaacaacaactaacctgactcaa 259  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  26962039 tatcaaatactatatattgcaagataaaacaacaacaaacctgactcaa 26961991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 211 - 259
Target Start/End: Complemental strand, 26980337 - 26980289
Alignment:
Q  211 tatcaaacactatatattgcaagataaaacaacaactaacctgactcaa 259  Q
    ||||||| |||||||||||||| ||||||||||||| ||||||||||||    
T  26980337 tatcaaatactatatattgcaaaataaaacaacaacaaacctgactcaa 26980289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 33 - 98
Target Start/End: Complemental strand, 2820438 - 2820373
Alignment:
Q  33 tgacattgatttgtcgacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatg 98  Q
    |||||||||| |||  | ||| ||| |||||||||||||||| ||||||||||||||| |||||||    
T  2820438 tgacattgatatgtaaataccaataataatttgagaaaataaaataaatgaatgtaatcacatatg 2820373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 222 - 259
Target Start/End: Complemental strand, 26649393 - 26649356
Alignment:
Q  222 atatattgcaagataaaacaacaactaacctgactcaa 259  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  26649393 atatattgcaagataaaacaacaacgaacctgactcaa 26649356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 222 - 259
Target Start/End: Complemental strand, 26755361 - 26755324
Alignment:
Q  222 atatattgcaagataaaacaacaactaacctgactcaa 259  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  26755361 atatattgcaagataaaacaacaacgaacctgactcaa 26755324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 162 - 207
Target Start/End: Original strand, 27608250 - 27608295
Alignment:
Q  162 gtttgggaattgaatataggtgcctccagcctcatgtagtttctgt 207  Q
    ||||||||||| || |||||||| ||||||||||||||||||||||    
T  27608250 gtttgggaattcaaaataggtgcatccagcctcatgtagtttctgt 27608295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 162 - 207
Target Start/End: Original strand, 27715637 - 27715682
Alignment:
Q  162 gtttgggaattgaatataggtgcctccagcctcatgtagtttctgt 207  Q
    ||||||||||| ||||||||||| |||||||| |||||||||||||    
T  27715637 gtttgggaatttaatataggtgcatccagcctgatgtagtttctgt 27715682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 45 - 117
Target Start/End: Complemental strand, 5970170 - 5970098
Alignment:
Q  45 gtcgacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 117  Q
    |||||||| | || |||||||| ||||| |||||| | | |||||||||| |||| |||||||||||||||||    
T  5970170 gtcgacacagttaataatttgaaaaaatcacataattcagtgtaattacaaatgtgggtgtcgtgtcggtgtc 5970098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 45 - 117
Target Start/End: Original strand, 15443692 - 15443764
Alignment:
Q  45 gtcgacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 117  Q
    ||||||| | ||| ||||||||||||||||||||| | ||| |||||| |||||| ||||| |||||| ||||    
T  15443692 gtcgacatcaataataatttgagaaaataacataattcaatataattatatatgttggtgttgtgtcgatgtc 15443764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 207
Target Start/End: Complemental strand, 26058938 - 26058891
Alignment:
Q  160 gtgtttgggaattgaatataggtgcctccagcctcatgtagtttctgt 207  Q
    |||||||||||| |||||| ||||| ||||| ||||||||||||||||    
T  26058938 gtgtttgggaatagaatatgggtgcatccagactcatgtagtttctgt 26058891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 207
Target Start/End: Complemental strand, 26078908 - 26078861
Alignment:
Q  160 gtgtttgggaattgaatataggtgcctccagcctcatgtagtttctgt 207  Q
    |||||||||||| |||||| ||||| ||||| ||||||||||||||||    
T  26078908 gtgtttgggaatagaatatgggtgcatccagactcatgtagtttctgt 26078861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 118
Target Start/End: Original strand, 32313403 - 32313474
Alignment:
Q  47 cgacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtca 118  Q
    ||||||| ||| ||| ||||||||||||||| | | |||| ||||| || ||| ||||||||||||||||||    
T  32313403 cgacaccaataataagttgagaaaataacatgattcaatgcaattatatgtgtgggtgtcgtgtcggtgtca 32313474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 118
Target Start/End: Complemental strand, 8931649 - 8931591
Alignment:
Q  60 aatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtca 118  Q
    |||||||||||||||||||| | | | |||||| || ||||| ||||||||||||||||    
T  8931649 aatttgagaaaataacataattcagtataattatatgtgtcgatgtcgtgtcggtgtca 8931591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 117
Target Start/End: Complemental strand, 9195802 - 9195744
Alignment:
Q  59 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 117  Q
    |||||||||||||| |||||| | | |||||||| || |||||||||||||| ||||||    
T  9195802 taatttgagaaaatgacataatttagtgtaattatatgtgtcggtgtcgtgtaggtgtc 9195744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 117
Target Start/End: Original strand, 9617445 - 9617503
Alignment:
Q  59 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 117  Q
    |||||||||||||| |||||| | |||||||||| || ||||||||||||  |||||||    
T  9617445 taatttgagaaaatcacataattcaatgtaattatatgtgtcggtgtcgtcgcggtgtc 9617503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 117
Target Start/End: Original strand, 16766708 - 16766766
Alignment:
Q  59 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 117  Q
    |||||||| ||||| |||||| | | ||||||||||  |||||||||||||||||||||    
T  16766708 taatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtc 16766766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 105
Target Start/End: Complemental strand, 10335427 - 10335378
Alignment:
Q  56 tagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgt 105  Q
    ||||||||||||||||| |||||| |||||||||| | || |||||||||    
T  10335427 tagtaatttgagaaaatgacataattgaatgtaatcagatgtgtcggtgt 10335378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 117
Target Start/End: Complemental strand, 25038130 - 25038061
Alignment:
Q  48 gacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 117  Q
    ||||||| || |||||||||||||| |||||| | | |||||||||| |||||||| | |||| ||||||    
T  25038130 gacaccgttaataatttgagaaaattacataatttagtgtaattacaaatgtcggtattgtgttggtgtc 25038061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 117
Target Start/End: Original strand, 26562701 - 26562758
Alignment:
Q  60 aatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 117  Q
    ||||||||||||| |||||| | | |||||||| || ||||| |||||||||||||||    
T  26562701 aatttgagaaaatcacataattcagtgtaattatatgtgtcgatgtcgtgtcggtgtc 26562758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 206
Target Start/End: Complemental strand, 26876572 - 26876539
Alignment:
Q  173 gaatataggtgcctccagcctcatgtagtttctg 206  Q
    |||||||||||| |||||||||||||||||||||    
T  26876572 gaatataggtgcatccagcctcatgtagtttctg 26876539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 101
Target Start/End: Original strand, 29449689 - 29449734
Alignment:
Q  56 tagtaatttgagaaaataacataaatgaatgtaattacatatgtcg 101  Q
    ||||||||| |||||||||||||| |||||||||| |||| |||||    
T  29449689 tagtaatttcagaaaataacataattgaatgtaatcacatgtgtcg 29449734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 99
Target Start/End: Original strand, 34625732 - 34625785
Alignment:
Q  46 tcgacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgt 99  Q
    |||||||||||| |||||||||||||| |  ||| |||||||||| ||||||||    
T  34625732 tcgacaccgataataatttgagaaaatgaattaattgaatgtaatcacatatgt 34625785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 107
Target Start/End: Original strand, 7377978 - 7378038
Alignment:
Q  47 cgacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcg 107  Q
    |||||||| ||  ||||||||||||| |||||| | |||||||||| || |||||||||||    
T  7377978 cgacaccgctaaaaatttgagaaaatcacataattcaatgtaattatatgtgtcggtgtcg 7378038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 9025542 - 9025490
Alignment:
Q  59 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtc 111  Q
    |||||||||||||| |||||| | | |||||||| || |||||||||||||||    
T  9025542 taatttgagaaaatcacataattcagtgtaattatatgtgtcggtgtcgtgtc 9025490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 107
Target Start/End: Original strand, 9629394 - 9629442
Alignment:
Q  59 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcg 107  Q
    |||||||||||||| |||||| | |||||||||| || |||||||||||    
T  9629394 taatttgagaaaatcacataattcaatgtaattatatgtgtcggtgtcg 9629442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 117
Target Start/End: Complemental strand, 10760903 - 10760832
Alignment:
Q  45 gtcgacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 117  Q
    |||||||| |||| |||||||||||||| |||| | |||||||||| |||  ||||| |||||||| ||||||    
T  10760903 gtcgacactgataataatttgagaaaatgacat-attgaatgtaatcacacgtgtcgatgtcgtgttggtgtc 10760832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 20371170 - 20371110
Alignment:
Q  47 cgacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcg 107  Q
    |||||||| || |||||||||||||| |||||| | ||||| |||| || |||||||||||    
T  20371170 cgacaccgctaataatttgagaaaatcacataactcaatgtgattatatgtgtcggtgtcg 20371110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 117
Target Start/End: Complemental strand, 21395365 - 21395298
Alignment:
Q  49 acaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 117  Q
    |||||| || ||||||||||||||| ||||| | | ||||||||||  ||||||||||||||| |||||    
T  21395365 acaccgctaataatttgagaaaata-cataatttagtgtaattacaagtgtcggtgtcgtgtcagtgtc 21395298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 35 - 166
Target Start/End: Original strand, 264591 - 264724
Alignment:
Q  35 acattgatttgtcgacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtcaaatac--acacatgtt 132  Q
    |||||||||||||| |||| ||| |||||| ||||| |||||||  | |||||||| |||| ||| ||||||||||| ||||| || ||  ||| |||||    
T  264591 acattgatttgtcgtcaccaatattaatttaagaaagtaacatacttaaatgtaatcacatgtgttggtgtcgtgtcagtgtcgaacacaaacatatgtt 264690  T
Q  133 ggacaccagacacgccttcaatgagaagtgtttg 166  Q
    || |||| |||||||| || ||||||||||||||    
T  264691 gggcacctgacacgccatctatgagaagtgtttg 264724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 59 - 117
Target Start/End: Original strand, 44482241 - 44482299
Alignment:
Q  59 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 117  Q
    |||||||||||||| |||||| | | |||||||| || |||||||||||||||||||||    
T  44482241 taatttgagaaaatcacataattcagtgtaattatatgtgtcggtgtcgtgtcggtgtc 44482299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 45 - 105
Target Start/End: Original strand, 14332406 - 14332465
Alignment:
Q  45 gtcgacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgt 105  Q
    |||||||||||||  ||||||||||||| |||||| | |||||||| ||||||||||||||    
T  14332406 gtcgacaccgataa-aatttgagaaaatgacataattcaatgtaatcacatatgtcggtgt 14332465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 51 - 95
Target Start/End: Complemental strand, 23605176 - 23605132
Alignment:
Q  51 accgatagtaatttgagaaaataacataaatgaatgtaattacat 95  Q
    |||||||||||||||||||||||||| || |||||||||| ||||    
T  23605176 accgatagtaatttgagaaaataacaaaattgaatgtaatcacat 23605132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 90
Target Start/End: Complemental strand, 17080941 - 17080898
Alignment:
Q  47 cgacaccgatagtaatttgagaaaataacataaatgaatgtaat 90  Q
    ||||||| ||| ||||||||||||||||||||| ||||||||||    
T  17080941 cgacaccaataataatttgagaaaataacataattgaatgtaat 17080898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 117
Target Start/End: Complemental strand, 5376560 - 5376490
Alignment:
Q  47 cgacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 117  Q
    |||||||| || |||||| |||||||||||||| | | |||||||| |  |||||||||||||||| ||||    
T  5376560 cgacaccgctaataatttaagaaaataacataattcagtgtaattaaaagtgtcggtgtcgtgtcgatgtc 5376490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 111
Target Start/End: Original strand, 6427351 - 6427413
Alignment:
Q  49 acaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtc 111  Q
    |||||| || |||||||||||||| |||||| | |||||||||| || ||| |||||||||||    
T  6427351 acaccgctaataatttgagaaaatcacataattcaatgtaattatatgtgttggtgtcgtgtc 6427413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 378
Target Start/End: Complemental strand, 18008642 - 18008612
Alignment:
Q  348 taacttgtactacaagttatctatctaagct 378  Q
    |||||||||||||||||||||||||||||||    
T  18008642 taacttgtactacaagttatctatctaagct 18008612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 117
Target Start/End: Original strand, 25361897 - 25361955
Alignment:
Q  59 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 117  Q
    |||||||||||||| |||||| | | |||||||| || |||| ||||||||||||||||    
T  25361897 taatttgagaaaatcacataattcagtgtaattatatgtgtcagtgtcgtgtcggtgtc 25361955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 113
Target Start/End: Complemental strand, 34712431 - 34712377
Alignment:
Q  59 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcgg 113  Q
    ||||||||||||||||||||| | | |||||||| || |||| ||||||||||||    
T  34712431 taatttgagaaaataacataatttagtgtaattatatgtgtcagtgtcgtgtcgg 34712377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 100
Target Start/End: Complemental strand, 43609871 - 43609825
Alignment:
Q  54 gatagtaatttgagaaaataacataaatgaatgtaattacatatgtc 100  Q
    |||| ||||||||||||||||||||| |||||||||| |||| ||||    
T  43609871 gataataatttgagaaaataacataattgaatgtaatcacatgtgtc 43609825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 90
Target Start/End: Original strand, 21057780 - 21057825
Alignment:
Q  45 gtcgacaccgatagtaatttgagaaaataacataaatgaatgtaat 90  Q
    |||||||||| || |||||| |||||||||||||| ||||||||||    
T  21057780 gtcgacaccgctaataattttagaaaataacataattgaatgtaat 21057825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 105
Target Start/End: Complemental strand, 40158456 - 40158412
Alignment:
Q  61 atttgagaaaataacataaatgaatgtaattacatatgtcggtgt 105  Q
    |||||||||||| ||||||||||||| ||| |||| |||||||||    
T  40158456 atttgagaaaatgacataaatgaatgaaatcacatgtgtcggtgt 40158412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 41877530 - 41877470
Alignment:
Q  47 cgacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcg 107  Q
    |||||||| || |||||||||||||| |||||| | | ||||||||||  |||||||||||    
T  41877530 cgacaccgctaataatttgagaaaattacataatttagtgtaattacaagtgtcggtgtcg 41877470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 44 - 111
Target Start/End: Original strand, 99889 - 99956
Alignment:
Q  44 tgtcgacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtc 111  Q
    |||||||||||||| |||||| |||||||||||||| | |||||||||| || ||| |||||||||||    
T  99889 tgtcgacaccgataataattttagaaaataacataattcaatgtaattatatgtgttggtgtcgtgtc 99956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 59 - 117
Target Start/End: Complemental strand, 22423860 - 22423802
Alignment:
Q  59 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 117  Q
    |||||||||||||| |||||| | ||| |||||| ||||||||||||||||||||||||    
T  22423860 taatttgagaaaatcacataattcaatataattatatatgtcggtgtcgtgtcggtgtc 22423802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 112
Target Start/End: Complemental strand, 4991429 - 4991372
Alignment:
Q  54 gatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcg 112  Q
    ||||||||||||||||||| ||||||||  ||||||||| || ||||||||||||||||    
T  4991429 gatagtaatttgagaaaatgacataaat-catgtaattagatgtgtcggtgtcgtgtcg 4991372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 44 - 113
Target Start/End: Complemental strand, 38749626 - 38749557
Alignment:
Q  44 tgtcgacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcgg 113  Q
    |||||||||||||| |||||||| ||||| |||||| | |||||||||| || ||| ||||| |||||||    
T  38749626 tgtcgacaccgataataatttgaaaaaatgacataattcaatgtaattatatgtgttggtgttgtgtcgg 38749557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 111
Target Start/End: Complemental strand, 16374381 - 16374338
Alignment:
Q  68 aaaataacataaatgaatgtaattacatatgtcggtgtcgtgtc 111  Q
    |||||||||||||| | ||||||||||| |||||||||||||||    
T  16374381 aaaataacataaatcagtgtaattacatgtgtcggtgtcgtgtc 16374338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 117
Target Start/End: Original strand, 3966502 - 3966572
Alignment:
Q  47 cgacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 117  Q
    |||||||| || |||||||||||||| ||| || | | |||||||| || ||||||||||||||| |||||    
T  3966502 cgacaccgctaataatttgagaaaatcacacaattcagtgtaattatatgtgtcggtgtcgtgtcagtgtc 3966572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 117
Target Start/End: Original strand, 18592072 - 18592142
Alignment:
Q  47 cgacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 117  Q
    |||||||| || || ||| ||||||| |||||| | |||||||||| || || ||||||||||||||||||    
T  18592072 cgacaccgctaatattttaagaaaattacataattcaatgtaattatatgtgccggtgtcgtgtcggtgtc 18592142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 117
Target Start/End: Original strand, 21522761 - 21522819
Alignment:
Q  59 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 117  Q
    |||||| | |||||||||||| | | ||||||||||  |||||||||||||||||||||    
T  21522761 taattttaaaaaataacataattcagtgtaattacaattgtcggtgtcgtgtcggtgtc 21522819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 117
Target Start/End: Original strand, 21533327 - 21533385
Alignment:
Q  59 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 117  Q
    |||||| | |||||||||||| | | ||||||||||  |||||||||||||||||||||    
T  21533327 taattttaaaaaataacataattcagtgtaattacaattgtcggtgtcgtgtcggtgtc 21533385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 111
Target Start/End: Complemental strand, 43208332 - 43208270
Alignment:
Q  49 acaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtc 111  Q
    |||||||||||||||||||||||| |||||| | |||||||| | || |||| |||| |||||    
T  43208332 acaccgatagtaatttgagaaaatgacataattcaatgtaatcatatctgtctgtgttgtgtc 43208270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 110
Target Start/End: Original strand, 36838544 - 36838605
Alignment:
Q  49 acaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgt 110  Q
    |||||| || |||||||||||||| |||||| | | |||||||| || ||||||||||||||    
T  36838544 acaccgctaataatttgagaaaattacataatttagtgtaattatatgtgtcggtgtcgtgt 36838605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 113
Target Start/End: Complemental strand, 41558701 - 41558648
Alignment:
Q  60 aatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcgg 113  Q
    ||||||||||||| |||||| | |||||||||| || |||| ||||||||||||    
T  41558701 aatttgagaaaatgacataattcaatgtaattaaatgtgtcagtgtcgtgtcgg 41558648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 115
Target Start/End: Original strand, 6035482 - 6035549
Alignment:
Q  47 cgacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtg 115  Q
    |||||||| || |||||||||||| ||| |||| | | |||||||| || |||||||||||||||||||    
T  6035482 cgacaccgctaataatttgagaaa-taatataattcagtgtaattatatttgtcggtgtcgtgtcggtg 6035549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 107
Target Start/End: Original strand, 8420038 - 8420086
Alignment:
Q  59 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcg 107  Q
    |||||||| |||||||||||| | ||||||||||||  |||||||||||    
T  8420038 taatttgaaaaaataacataattcaatgtaattacaagtgtcggtgtcg 8420086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 117
Target Start/End: Complemental strand, 37328866 - 37328834
Alignment:
Q  85 tgtaattacatatgtcggtgtcgtgtcggtgtc 117  Q
    ||||||||||| |||||||||||||||||||||    
T  37328866 tgtaattacatgtgtcggtgtcgtgtcggtgtc 37328834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 56 - 161
Target Start/End: Original strand, 45382751 - 45382858
Alignment:
Q  56 tagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtcaaatac--acacatgttggacaccagacacgccttcaa 153  Q
    ||||||||| |||||||||||||  |||||||||| ||||||||||||| | ||| ||||||| | ||  ||| |||| ||||||| |||| |||||| |    
T  45382751 tagtaatttaagaaaataacatatttgaatgtaatcacatatgtcggtgacatgttggtgtcagacacagacaaatgtcggacaccggacatgccttcga 45382850  T
Q  154 tgagaagt 161  Q
    | ||||||    
T  45382851 tcagaagt 45382858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 47 - 118
Target Start/End: Complemental strand, 16192810 - 16192739
Alignment:
Q  47 cgacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtca 118  Q
    |||||||| || ||||||||||||||||||||| | | |||||||| || ||| | ||||||||||||||||    
T  16192810 cgacaccgttaataatttgagaaaataacataattcagtgtaattatatgtgttgatgtcgtgtcggtgtca 16192739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 49 - 117
Target Start/End: Complemental strand, 8039893 - 8039825
Alignment:
Q  49 acaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 117  Q
    |||||| || |||||||||||||| | |||| | | |||||||| || |||||||||||||||||||||    
T  8039893 acaccgctaataatttgagaaaattatataattcagtgtaattatatgtgtcggtgtcgtgtcggtgtc 8039825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 95
Target Start/End: Complemental strand, 19323511 - 19323460
Alignment:
Q  44 tgtcgacaccgatagtaatttgagaaaataacataaatgaatgtaattacat 95  Q
    ||||||||| ||||||||||||||||||| |||||| ||||| |||| ||||    
T  19323511 tgtcgacactgatagtaatttgagaaaatgacataattgaatttaatcacat 19323460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 103
Target Start/End: Original strand, 28576716 - 28576771
Alignment:
Q  48 gacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggt 103  Q
    ||||||| || |||||||||||||| ||| || ||||||||||||||| |||||||    
T  28576716 gacaccggtaataatttgagaaaatgacaaaattgaatgtaattacatgtgtcggt 28576771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 107
Target Start/End: Complemental strand, 35990587 - 35990525
Alignment:
Q  45 gtcgacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcg 107  Q
    |||||||| |||| |||||||||||||||| |||| |||||||||  |||| |||| ||||||    
T  35990587 gtcgacactgataataatttgagaaaataaaataactgaatgtaaccacatgtgtcagtgtcg 35990525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 113
Target Start/End: Complemental strand, 3185306 - 3185242
Alignment:
Q  48 gacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcgg 113  Q
    |||| ||||| |||||| |||| ||| ||||| ||||||||||||||| |||| ||||||||||||    
T  3185306 gacatcgataataatttcagaagata-cataattgaatgtaattacatgtgtcagtgtcgtgtcgg 3185242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 27097113 - 27097065
Alignment:
Q  53 cgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcg 101  Q
    |||||||||||||||||||| |||||| | ||| |||||| ||||||||    
T  27097113 cgatagtaatttgagaaaattacataattcaatttaattatatatgtcg 27097065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 59 - 117
Target Start/End: Original strand, 6028636 - 6028694
Alignment:
Q  59 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 117  Q
    |||||||| || ||||||||| | |||||||||||| |||||||||||||||| |||||    
T  6028636 taatttgaaaatataacataatttaatgtaattacaaatgtcggtgtcgtgtcagtgtc 6028694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 59 - 112
Target Start/End: Complemental strand, 7328739 - 7328686
Alignment:
Q  59 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcg 112  Q
    ||||||||||||||||||||| | | |||||||| || ||||||||||||||||    
T  7328739 taatttgagaaaataacataatttagtgtaattatatgtgtcggtgtcgtgtcg 7328686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 59 - 120
Target Start/End: Original strand, 7438717 - 7438778
Alignment:
Q  59 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtcaaa 120  Q
    |||||||| ||||| |||||| | ||||||||||||  |||||||||| |||||||||||||    
T  7438717 taatttgaaaaaatcacataattcaatgtaattacaagtgtcggtgtcatgtcggtgtcaaa 7438778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 113
Target Start/End: Complemental strand, 31808566 - 31808503
Alignment:
Q  50 caccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcgg 113  Q
    |||||||| |||||||||||||| ||| || | |||||||| |||| ||| |||||||||||||    
T  31808566 caccgataataatttgagaaaatgacacaagtcaatgtaatcacatgtgttggtgtcgtgtcgg 31808503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 103
Target Start/End: Original strand, 43160492 - 43160539
Alignment:
Q  56 tagtaatttgagaaaataacataaatgaatgtaattacatatgtcggt 103  Q
    ||||||||| |||||||||||||| |||||||||| |||| |||||||    
T  43160492 tagtaatttaagaaaataacataattgaatgtaatcacatgtgtcggt 43160539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 113
Target Start/End: Original strand, 17307904 - 17307958
Alignment:
Q  59 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcgg 113  Q
    ||||||||||||||||||||| | | |||||||| || ||| |||||||||||||    
T  17307904 taatttgagaaaataacataattcagtgtaattatatgtgttggtgtcgtgtcgg 17307958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 117
Target Start/End: Original strand, 24339653 - 24339711
Alignment:
Q  59 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 117  Q
    |||||||| ||||| |||||| | | ||||||||||  |||||||||||||||||||||    
T  24339653 taatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtc 24339711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 113
Target Start/End: Original strand, 16341496 - 16341561
Alignment:
Q  48 gacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcgg 113  Q
    ||||| |||| |||||||||||||| |||||| | | |||||||| || || ||||||||||||||    
T  16341496 gacactgataataatttgagaaaatcacataattaagtgtaattatatgtgccggtgtcgtgtcgg 16341561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 116
Target Start/End: Original strand, 32308119 - 32308188
Alignment:
Q  47 cgacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgt 116  Q
    |||||||| || |||||||||||||| |||||| | | |||||||  || |||| |||||||||||||||    
T  32308119 cgacaccgctaataatttgagaaaatcacataattcagtgtaattgtatgtgtcagtgtcgtgtcggtgt 32308188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 12843223 - 12843171
Alignment:
Q  59 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtc 111  Q
    |||||||| ||||| |||||| | ||||||||||||| |||| ||||||||||    
T  12843223 taatttgataaaattacataattcaatgtaattacatgtgtcagtgtcgtgtc 12843171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 27945052 - 27945104
Alignment:
Q  59 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtc 111  Q
    |||||||||||||| |||||| | | ||||||||||  |||||||||||||||    
T  27945052 taatttgagaaaattacataattcagtgtaattacaagtgtcggtgtcgtgtc 27945104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 116
Target Start/End: Complemental strand, 38134465 - 38134397
Alignment:
Q  48 gacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgt 116  Q
    |||||||||| |||||||||||||| |||||| | |||||||| | || ||||||| || ||| |||||    
T  38134465 gacaccgataataatttgagaaaatgacataattcaatgtaatcatatgtgtcggtctcatgtgggtgt 38134397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 59 - 105
Target Start/End: Complemental strand, 44605187 - 44605141
Alignment:
Q  59 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgt 105  Q
    ||||||||||||||||||||| | ||||||||||||| |||||||||    
T  44605187 taatttgagaaaataacataattcaatgtaattacatgtgtcggtgt 44605141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 107
Target Start/End: Original strand, 31026692 - 31026754
Alignment:
Q  45 gtcgacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcg 107  Q
    ||||| ||||||| |||||| ||||||| |||||| | |||||||| | ||||||||||||||    
T  31026692 gtcgagaccgataataatttaagaaaatgacataattcaatgtaatcatatatgtcggtgtcg 31026754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 116
Target Start/End: Original strand, 40681982 - 40682050
Alignment:
Q  48 gacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgt 116  Q
    |||||||||| |||||||||||||| |||||| | ||||||||| ||  ||||  |||||||| |||||    
T  40681982 gacaccgataataatttgagaaaatgacataattcaatgtaattgcacgtgtcaatgtcgtgttggtgt 40682050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 116
Target Start/End: Original strand, 44860320 - 44860388
Alignment:
Q  48 gacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgt 116  Q
    ||||||| || ||||||||||||||  ||||| | | |||||||| || |||||||||||||| |||||    
T  44860320 gacaccgctaataatttgagaaaatcgcataattcagtgtaattatatgtgtcggtgtcgtgttggtgt 44860388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 16308 - 16263
Alignment:
Q  162 gtttgggaattgaatataggtgcctccagcctcatgtagtttctgt 207  Q
    ||||||||||| ||||||||||| |||||||| |||||||||||||    
T  16308 gtttgggaatttaatataggtgcatccagcctgatgtagtttctgt 16263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 107
Target Start/End: Original strand, 12985392 - 12985451
Alignment:
Q  48 gacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcg 107  Q
    |||||| ||| |||||||||||||| |||||| | |||||||| | ||||||||||||||    
T  12985392 gacacctataataatttgagaaaatcacataattcaatgtaatcatatatgtcggtgtcg 12985451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 117
Target Start/End: Original strand, 22651987 - 22652045
Alignment:
Q  59 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 117  Q
    |||||||| ||||| |||||| | ||| ||||||||  |||||||||||||||||||||    
T  22651987 taatttgaaaaaatcacataattcaatataattacaagtgtcggtgtcgtgtcggtgtc 22652045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 169 - 207
Target Start/End: Original strand, 29270983 - 29271021
Alignment:
Q  169 aattgaatataggtgcctccagcctcatgtagtttctgt 207  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  29270983 aattgaatataggtgcatccagtctcatgtagtttctgt 29271021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 117
Target Start/End: Complemental strand, 29447158 - 29447100
Alignment:
Q  59 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 117  Q
    |||||||||||||| |||||| | ||||||| ||||  |||||||||| ||||||||||    
T  29447158 taatttgagaaaatcacataattcaatgtaactacaagtgtcggtgtcatgtcggtgtc 29447100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 110
Target Start/End: Complemental strand, 31681881 - 31681827
Alignment:
Q  56 tagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgt 110  Q
    ||||||||| ||||||| |||||| |||||| ||| |||| ||||||||||||||    
T  31681881 tagtaatttaagaaaatgacataattgaatgaaatcacatgtgtcggtgtcgtgt 31681827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 111
Target Start/End: Complemental strand, 31548354 - 31548289
Alignment:
Q  46 tcgacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtc 111  Q
    |||||||||||| | |||||| ||||| |||||| | |||||||| |||| |||||||||| ||||    
T  31548354 tcgacaccgataattatttgataaaatgacataattcaatgtaatcacatgtgtcggtgtcatgtc 31548289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 126
Target Start/End: Original strand, 9382983 - 9383048
Alignment:
Q  59 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtcaaatacaca 126  Q
    |||||||||||||  |||||| | ||||||||||  | |||| ||||||||||||||||||| |||||    
T  9382983 taatttgagaaaactacataattcaatgtaatta--tgtgtctgtgtcgtgtcggtgtcaaacacaca 9383048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 111
Target Start/End: Original strand, 13650755 - 13650819
Alignment:
Q  48 gacaccgatagtaatttgagaaaata-acataaatgaatgtaattacatatgtcggtgtcgtgtc 111  Q
    |||||||||||||| ||||||||||| |  | ||||||||||| ||||| || ||||||||||||    
T  13650755 gacaccgatagtaagttgagaaaatagaagttaatgaatgtaactacatgtgacggtgtcgtgtc 13650819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 111
Target Start/End: Original strand, 13709398 - 13709462
Alignment:
Q  48 gacaccgatagtaatttgagaaaata-acataaatgaatgtaattacatatgtcggtgtcgtgtc 111  Q
    |||||||||||||| ||||||||||| |  | ||||||||||| ||||| || ||||||||||||    
T  13709398 gacaccgatagtaagttgagaaaatagaagttaatgaatgtaactacatgtgacggtgtcgtgtc 13709462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 107
Target Start/End: Complemental strand, 13844644 - 13844596
Alignment:
Q  59 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcg 107  Q
    |||||||||||||| |||||| ||| |||||||| || |||||||||||    
T  13844644 taatttgagaaaatcacataattgagtgtaattatatgtgtcggtgtcg 13844596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 124 - 164
Target Start/End: Complemental strand, 31105853 - 31105813
Alignment:
Q  124 acacatgttggacaccagacacgccttcaatgagaagtgtt 164  Q
    ||||||||||||||||||||||  |||||||| ||||||||    
T  31105853 acacatgttggacaccagacacatcttcaatgtgaagtgtt 31105813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 118
Target Start/End: Complemental strand, 24613749 - 24613690
Alignment:
Q  59 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtca 118  Q
    |||||||||||||| |||||| | ||||||| ||||  |||||||||| |||||||||||    
T  24613749 taatttgagaaaatcacataattcaatgtaagtacaagtgtcggtgtcatgtcggtgtca 24613690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 117
Target Start/End: Complemental strand, 35723445 - 35723374
Alignment:
Q  47 cgacaccgatagtaatttgagaaaata-acataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 117  Q
    |||||||| || ||||||||||||||| |||||| | |||||||||| || |||| ||||||| ||||||||    
T  35723445 cgacaccgctaataatttgagaaaatacacataattcaatgtaattatatgtgtcagtgtcgtatcggtgtc 35723374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 95
Target Start/End: Complemental strand, 44797025 - 44796974
Alignment:
Q  44 tgtcgacaccgatagtaatttgagaaaataacataaatgaatgtaattacat 95  Q
    |||| ||||||| | ||||||||||||||||||||| | |||||||||||||    
T  44797025 tgtcaacaccgacaataatttgagaaaataacataattcaatgtaattacat 44796974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 72
Target Start/End: Original strand, 18727855 - 18727893
Alignment:
Q  34 gacattgatttgtcgacaccgatagtaatttgagaaaat 72  Q
    |||||||||||||| ||||| ||||||||||||||||||    
T  18727855 gacattgatttgtcaacaccaatagtaatttgagaaaat 18727893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 120
Target Start/End: Original strand, 4383379 - 4383439
Alignment:
Q  59 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtcaaa 120  Q
    |||||||| ||||| |||||| | | |||||||||| ||||| |||||||||||||||||||    
T  4383379 taatttga-aaaatcacataattcagtgtaattacaaatgtcagtgtcgtgtcggtgtcaaa 4383439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 113
Target Start/End: Complemental strand, 18513300 - 18513235
Alignment:
Q  48 gacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcgg 113  Q
    |||||||||| |||||||||||||| |||||| | |||||||| | || |||| |||| |||||||    
T  18513300 gacaccgataataatttgagaaaatgacataattcaatgtaatcatatgtgtcagtgttgtgtcgg 18513235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 8423778 - 8423718
Alignment:
Q  47 cgacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcg 107  Q
    |||||||| || |||||||||||||| |||||| | | |||||||| | ||||||||||||    
T  8423778 cgacaccgctaataatttgagaaaatcacataattcagtgtaattataaatgtcggtgtcg 8423718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 44572 - 44516
Alignment:
Q  60 aatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgt 116  Q
    ||||||||||||| |||||| | | |||||||| || ||||||| ||||||||||||    
T  44572 aatttgagaaaatcacataattcagtgtaattatatgtgtcggtatcgtgtcggtgt 44516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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