View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_102 (Length: 358)
Name: NF7829A_low_102
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_102 |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 16161005 - 16160659
Alignment:
| Q |
1 |
tcacataaaagagacacacaacataaaaattcaaaaggaacaacataagagggagtccatatctccaaacaaaatgaagcaaacaacaacaaacatagac |
100 |
Q |
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| T |
16161005 |
tcacataaaagagacacacaacataaaaattcaaaaggaacaacataagagggagtccacatctccaaacaaaatgaagcaaacaacaacaaacatagac |
16160906 |
T |
|
| Q |
101 |
acaatggttcaattgatgcactaatgcagccattattacaaacgataactcagacagttcgacaaccaaccactacgttcaaccctttctaatccttcca |
200 |
Q |
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| T |
16160905 |
acaatggttcaattgatgcactaatgcagccattactacaaacgataactcagacagttcgacaaccaaccactgcgttcaaccctttctaatccttcca |
16160806 |
T |
|
| Q |
201 |
tatttctaggcaagagtctcatcatcagagtcaacttcaacaaaggcagaagaaagatttcttttgacaccagatccattagccttgaaagcagattcat |
300 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |
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| T |
16160805 |
tatttctgggcaagagtctcatcatcagagtcaacttcaacaaaggcagaagaaagatttcttttggcaccagatccat-----ttgaaagcagattcat |
16160711 |
T |
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| Q |
301 |
gttcagcaccaaaggccaaggaagtactctcaacagaaccggcaacaccaaa |
352 |
Q |
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|||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
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| T |
16160710 |
gttcagcaccaacggccaaggaagtactctcagcagaaccggcaacaccaaa |
16160659 |
T |
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