View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_103 (Length: 357)
Name: NF7829A_low_103
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_103 |
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Alignment Details
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 4 - 327
Target Start/End: Complemental strand, 37430749 - 37430426
Alignment:
| Q |
4 |
gtcaaaccagaacaccagaaaagatttgtcaagccaggacaggaaaacactaatagtccaatgcacaagacaagactaccacaatttcaaatacaaagag |
103 |
Q |
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| T |
37430749 |
gtcaaaccagaacaccagaaaagatttgtcaaaccaggacaggaaaacactaatagtccaatgcacaagacaagactaccacaatttcaaatacaaagag |
37430650 |
T |
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| Q |
104 |
aataagacatatatgcaatattcttttcccttattcattcttcttatcaactactatatgtttgcaatcaatgctttgtaggtcatgcttctgcatcttt |
203 |
Q |
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| T |
37430649 |
aataagacatatatgcaatattcttttccctgattcattctgcttatcaactactatatggttgcaatcaatgcttagtaggtcatgcttctgcatcttt |
37430550 |
T |
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| Q |
204 |
caaacctcttcataacctctatagatataggataaaataatcaaatccaaaatcctaaacaagagagtataatttcctctaaatggggtccttttgtttt |
303 |
Q |
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| T |
37430549 |
caaacctcttcataacatctatagatagaggctaaaataatcaaataaaaaatcctcaagaagagagtatagtttcctctaaatggggtccttttgtttt |
37430450 |
T |
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| Q |
304 |
ctatttccttatcttgcctttcac |
327 |
Q |
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|||||||||||||||||||||||| |
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| T |
37430449 |
ctatttccttatcttgcctttcac |
37430426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 280 - 327
Target Start/End: Complemental strand, 37698509 - 37698462
Alignment:
| Q |
280 |
ctctaaatggggtccttttgttttctatttccttatcttgcctttcac |
327 |
Q |
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||||||||||||||||||| | ||||||| |||||| ||||||||||| |
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| T |
37698509 |
ctctaaatggggtccttttttattctattgccttattttgcctttcac |
37698462 |
T |
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