View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_105 (Length: 355)
Name: NF7829A_low_105
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_105 |
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Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 13 - 334
Target Start/End: Original strand, 41792983 - 41793304
Alignment:
| Q |
13 |
gtagatacgaatcccttggaagaatcctaatttgtgtctttgtctcaattctcatctgttcaattatttttccaccttttcctagcaatgacccaacatg |
112 |
Q |
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| T |
41792983 |
gtagatacgaatcccttggaagaatcctaatttgtgtctttgtctcaattctcatctgttcaattatttttccaccttttcctagcaatgacccaacatg |
41793082 |
T |
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| Q |
113 |
cattttcgaaacaaccaacctactagaaacacgcttcccaccaccacctcttccgccgccgtagtcctcctcatcctcaaaccccggatcgttctccaac |
212 |
Q |
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| T |
41793083 |
cattttcgaaacaaccaacctactagaaacacgcttcccaccaccacctcttccgccgccgtagtcctcctcatcctcaaaccccggatcgttctccaac |
41793182 |
T |
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| Q |
213 |
agcctctcatgaatgagaagcaacgcctcctgcgccggcgaaaactgtggcattctaccatccggatcacggcggcgcgtgtcagaaatctcgataatcc |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41793183 |
agcctctcatgaatgagaagcaacgcctcctgcgccggcgaaaactgtggcattctaccatccggatcacggcggcgcgtgtcagaaatctcgataatcc |
41793282 |
T |
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| Q |
313 |
tctcctcatctccagccacagg |
334 |
Q |
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|||||||||||||||||||||| |
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| T |
41793283 |
tctcctcatctccagccacagg |
41793304 |
T |
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