View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_109 (Length: 350)
Name: NF7829A_low_109
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_109 |
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Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 7 - 335
Target Start/End: Original strand, 15276883 - 15277210
Alignment:
| Q |
7 |
ctttttgtgtttattttgatttttacttcatttatcattcaggcaaaatgtgtttaacaatttattttacactatacaactattaatctattaatcannn |
106 |
Q |
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| T |
15276883 |
ctttttgtgtttattttgatttttacttcatttatcattcaggcaaaatgtgtttaacaatttattttacactatacaactattaatctattaatcattt |
15276982 |
T |
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| Q |
107 |
nnnnngtttaacatattaataaattacttattaattnnnnnnntatttgatcaaaattttgagttaattaattatttcgagtctagccattgttcgctcg |
206 |
Q |
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| T |
15276983 |
tttt-gtttaacatattaataaattacttattaattaaaaaaatatttgatcaaaattttgagttgattaattatttcgagtctagccattgttcgttcg |
15277081 |
T |
|
| Q |
207 |
atgtagttcgttttgaagtctcattattctcattattgactaggtaattaagttgtatctctctctatgagaagcggctctctatccccgtgaaaagaaa |
306 |
Q |
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| T |
15277082 |
atgtagttcgttttgaagtctcattattctcgttattgaccaggtaattaagttgtatctctctctatgagaagcgactctctatccccgtgaaaagaaa |
15277181 |
T |
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| Q |
307 |
accctagtttttcacacacagcaactcat |
335 |
Q |
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| T |
15277182 |
accctagtttttcacacacagcaactcat |
15277210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 174 - 245
Target Start/End: Complemental strand, 44874188 - 44874114
Alignment:
| Q |
174 |
ttaattatttcgagtctagccattgttcgctcgatgtagtt---cgttttgaagtctcattattctcattattga |
245 |
Q |
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|||||||||| |||||||||||||||||||||| | ||||| |||||| |||||| |||||||||||||||| |
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| T |
44874188 |
ttaattatttggagtctagccattgttcgctcgctctagttcaccgttttaaagtcttgttattctcattattga |
44874114 |
T |
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