View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_11 (Length: 522)
Name: NF7829A_low_11
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_11 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-112; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 296 - 522
Target Start/End: Original strand, 4663422 - 4663654
Alignment:
| Q |
296 |
caggtccaatacaatatactaagtccaaacctacccatcaaactaatccccaacaaaaccaataaaagtacaattttttcacacaagaatcaaatgaata |
395 |
Q |
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| T |
4663422 |
caggtccaatacaatatactaagtccaaacctacccatcaaactaatccccaacaaaaccaataaaagtacaattttttcacataagaatcaaatgaata |
4663521 |
T |
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| Q |
396 |
aaaatggttgggatttgaaaaaggaccttgagatggcgtttgagtgaagaagctgtagctctatacatgacgaat------gaagaagaagaagaaaatg |
489 |
Q |
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| T |
4663522 |
aaaatggttgggatttgaaaaaggaccttgagatggcgtttgagtgaagaagctgtagctctatacatgacgaatggagaagaagaagaagaagaaaatg |
4663621 |
T |
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| Q |
490 |
aaaccctaaatcagaatcaaagatttgtgtgtg |
522 |
Q |
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| T |
4663622 |
aaaccctaaatcagaatcaaagatttgtgtgtg |
4663654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 126 - 181
Target Start/End: Original strand, 4663258 - 4663313
Alignment:
| Q |
126 |
tcaataaaatttcaaagtcctaacccacccaccaaactgtttcccagcaaatcact |
181 |
Q |
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| T |
4663258 |
tcaataaaatttcaaagtcctaaaccacccaccaaactatttcccagcaaatcact |
4663313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 23 - 61
Target Start/End: Original strand, 4663153 - 4663191
Alignment:
| Q |
23 |
acacctttaatctgaagtagcaacattcaccacaacatg |
61 |
Q |
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| T |
4663153 |
acacctttaatctgaagtagcaacattcaccacaacatg |
4663191 |
T |
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