View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_110 (Length: 349)
Name: NF7829A_low_110
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_110 |
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Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 18 - 334
Target Start/End: Original strand, 27774748 - 27775064
Alignment:
| Q |
18 |
catcattggttgcaggagtagcagtactctcctcagctgagtcgcccaatttcacatcatgtactttctcaggtaagcaaacgggaagggagtcatccct |
117 |
Q |
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| T |
27774748 |
catcattggttgcaggagtagcagtactctcctcagctgagtcgcccaatttcacatcatgtactttctcaggtaagcaaacaggaagggagtcatccct |
27774847 |
T |
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| Q |
118 |
cagcatctgcaatataaaaatcaatgtaaggaaaaatatcttagagtagatgcaaatgttataatttgtagtaaaaaacaacaatagcatgtctgtttga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
27774848 |
cagcatctgcaatataaaaatcaatgtaaggaaaaatatcttagagtagatgcaaatgttatcatttgtagtaaaaaacaacaatagcatgtctgtttga |
27774947 |
T |
|
| Q |
218 |
tataattgaaaacaaagaagataaacaacagccgtagttatcctggtggttggaaaataaagatgtattctaaatttaacatgtcaaaagataaaaatgt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27774948 |
tataattgaaaacaaagaagataaacaacagccgtagttatcctggtggttggaaaataaagatgtattctaaatttaacatgtcaaaagataaaaatgt |
27775047 |
T |
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| Q |
318 |
aaaagataaatgatgtc |
334 |
Q |
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||||||||||||||||| |
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| T |
27775048 |
aaaagataaatgatgtc |
27775064 |
T |
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