View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_111 (Length: 349)
Name: NF7829A_low_111
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_111 |
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| [»] scaffold0432 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 9805005 - 9804675
Alignment:
| Q |
1 |
tgaaaccactcacataaaagacaaccacaaattagagaaagacatgcaaaatgatcaagatnnnnnnntatatgaaaaaagtttggattcccttttttgc |
100 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||| ||||| |||| |
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| T |
9805005 |
tgaaaccactcacataaaagacaaccacaaatttgagaaagacatgcaaaatgatctagataaaaaaa-atatgaaaaaagtttggattacctttcttgc |
9804907 |
T |
|
| Q |
101 |
ccaaataatgaaacgaggttgaagtttcatgaaaactccatcaaaagagataaccattcatgagaggttggcaacggcgactggtcgatgtcgatctcag |
200 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
9804906 |
ccaaataatgaaacgaggttgaactttcatgaaaactccatcaaaagagataaccattcatgagaggttggcaacggcgactgatcgatgtcgatctcag |
9804807 |
T |
|
| Q |
201 |
tgaagtttcatggttcttttttctgatcgatgtcgatctcagtgatggtgctaggagagaggttggcaacggcgattgagggagaaaattttgtttaggg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||| |
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| T |
9804806 |
tgaagtttcatggttcttttttctgatcgatgtcgatctcagtgatggtgcttggagagaggttggcaacagcgattgagggagaaaattgtgtttaggg |
9804707 |
T |
|
| Q |
301 |
tttcaagagaatgagaaatgaggatgggagga |
332 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
9804706 |
tttcaagagaatgagaaatgaggatgggagga |
9804675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 9817930 - 9817777
Alignment:
| Q |
1 |
tgaaaccactcacataaaagacaaccacaaattagagaaagacatgcaaaatgatcaagatnnnnnnntatatgaaaaaagtttggattcccttttttgc |
100 |
Q |
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| T |
9817930 |
tgaaatcactcacataaaagacaaccacaaatcagagaaagacatgcaaaatgatctagataaaaaa--atgtggaaaaagttttgattaccttttttgc |
9817833 |
T |
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| Q |
101 |
ccaaataatgaaacgaggttgaagtttcatgaaaactccatcaaaagagataacca |
156 |
Q |
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| T |
9817832 |
ccaaataatggaacgaggttgaagtttcatgaaaattccatcaaaagagataacca |
9817777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 217 - 349
Target Start/End: Complemental strand, 9817693 - 9817561
Alignment:
| Q |
217 |
ttttttctgatcgatgtcgatctcagtgatggtgctaggagagaggttggcaacggcgattgagggagaaaattttgtttagggtttcaagagaatgaga |
316 |
Q |
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|||||||||||||||||||||||||| ||| || |||||||||||||| |||||||| |||||| ||||||| ||||||||||||||||| ||||||| |
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| T |
9817693 |
ttttttctgatcgatgtcgatctcagcaatgttggtaggagagaggttgtcaacggcggatgagggggaaaattgtgtttagggtttcaagataatgaga |
9817594 |
T |
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| Q |
317 |
aatgaggatgggaggattattttgtttgattga |
349 |
Q |
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| T |
9817593 |
aatgaggatgggaggattcttttgtttgattga |
9817561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 214 - 346
Target Start/End: Complemental strand, 9817577 - 9817445
Alignment:
| Q |
214 |
ttcttttttctgatcgatgtcgatctcagtgatggtgctaggagagaggttggcaacggcgattgagggagaaaattttgtttagggtttcaagagaatg |
313 |
Q |
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||||||| | |||| ||||||||||||| |||||| ||||||||||||||||| | ||| |||||||||||| ||||||||||||||||| |||||| |
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| T |
9817577 |
ttcttttgtttgattgatgtcgatctcacctatggtggtaggagagaggttggcagcagcggctgagggagaaaactttgtttagggtttcaaaagaatg |
9817478 |
T |
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| Q |
314 |
agaaatgaggatgggaggattattttgtttgat |
346 |
Q |
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| T |
9817477 |
agaaatgaggattggaggattcttttgattgat |
9817445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 224 - 332
Target Start/End: Complemental strand, 9817448 - 9817341
Alignment:
| Q |
224 |
tgatcgatgtcgatctcagtgatggtgctaggagagaggttggcaacggcgattgagggagaaaattttgtttagggtttcaagagaatgagaaatgagg |
323 |
Q |
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||||||||||||||| ||| ||||||| || |||||||||||||| ||||| |||||||||||| | ||||||||||||| |||||||||||||||||| |
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| T |
9817448 |
tgatcgatgtcgatc-cagcgatggtggtatgagagaggttggcagcggcggctgagggagaaaactgtgtttagggtttctagagaatgagaaatgagg |
9817350 |
T |
|
| Q |
324 |
atgggagga |
332 |
Q |
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||||||||| |
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| T |
9817349 |
atgggagga |
9817341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432 (Bit Score: 69; Significance: 6e-31; HSPs: 3)
Name: scaffold0432
Description:
Target: scaffold0432; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 11939 - 11788
Alignment:
| Q |
1 |
tgaaaccactcacataaaagacaaccacaaattagagaaagacatgcaaaatgatcaagatnnnnnnntatatgaaaaaa-gtttggattcccttttttg |
99 |
Q |
| |
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||||| |||||||||||||||||||||||||| ||| ||||||||||||||| || |||| || |||||||| ||| |||| |||||| || |
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| T |
11939 |
tgaaatcactcacataaaagacaaccacaaatcagataaagacatgcaaaattatatagataaaaca--atgtgaaaaaaagttaagattaccttttatg |
11842 |
T |
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| Q |
100 |
cccaaataatgaaacgaggttgaagtttcatgaaaactccatcaaaagagataa |
153 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11841 |
cccaattaatgaaacgaggttgaagtttcatgaaaactccatcaaaagagataa |
11788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 210 - 346
Target Start/End: Complemental strand, 11708 - 11572
Alignment:
| Q |
210 |
atggttcttttttctgatcgatgtcgatctcagtgatggtgctaggagagaggttggcaacggcgattgagggagaaaattttgtttagggtttcaagag |
309 |
Q |
| |
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|||||||||||||| |||||||| |||||||| ||||||| || |||||||||||| | ||| ||||| || |||| ||||||| | | |||||||| |
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| T |
11708 |
atggttcttttttccaatcgatgttgatctcagcgatggtggtatgagagaggttggtagcgggagttgagagataaaactttgttttgagattcaagag |
11609 |
T |
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| Q |
310 |
aatgagaaatgaggatgggaggattattttgtttgat |
346 |
Q |
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|||| ||| |||||||||||||||| ||||||||||| |
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| T |
11608 |
aatgggaagtgaggatgggaggattcttttgtttgat |
11572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 214 - 332
Target Start/End: Complemental strand, 11585 - 11467
Alignment:
| Q |
214 |
ttcttttttctgatcgatgtcgatctcagtgatggtgctaggagagaggttggcaacggcgattgagggagaaaattttgtttagggtttcaagagaatg |
313 |
Q |
| |
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||||||| | ||||| ||||||||||||| | | ||| ||| ||||||||||||| || || ||||||||||| | ||| | || ||||| |||||| |
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| T |
11585 |
ttcttttgtttgatcaatgtcgatctcagcggtagtggtagaagagaggttggcagcgacggccgagggagaaaactgtgtgtgggatttcatgagaata |
11486 |
T |
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| Q |
314 |
agaaatgaggatgggagga |
332 |
Q |
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||||||||||||||||||| |
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| T |
11485 |
agaaatgaggatgggagga |
11467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 2 - 156
Target Start/End: Original strand, 42778749 - 42778900
Alignment:
| Q |
2 |
gaaaccactcacataaaagacaaccacaaattagagaaagacatgcaaaatgatcaagatnnnnnnntatatgaaaaaagtttggattcccttttttgcc |
101 |
Q |
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||||||||||| ||||||| ||||||||||| | |||||| | |||||||||||| |||| || ||||||||||||||||| |||||||||| |
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| T |
42778749 |
gaaaccactcatataaaaggcaaccacaaatcaaagaaaggcgtgcaaaatgatctagataaagaa--atgtgaaaaaagtttggattaccttttttgct |
42778846 |
T |
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| Q |
102 |
caaataatgaaacgaggttgaagtttcatgaaaactccatcaaaagagataacca |
156 |
Q |
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||| | |||||||||||||||| || |||||||||||| |||||||||||||||| |
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| T |
42778847 |
caattgatgaaacgaggttgaa-ttgcatgaaaactccgtcaaaagagataacca |
42778900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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