View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_114 (Length: 346)
Name: NF7829A_low_114
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_114 |
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Alignment Details
Target: chr2 (Bit Score: 129; Significance: 1e-66; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 56 - 230
Target Start/End: Original strand, 10922533 - 10922706
Alignment:
| Q |
56 |
ttatcaaagtatacgtatgctggcgtgcaagaaaagctttacaaggattcaaacaaaaccatagattgagatatgccggcannnnnnncctcgttaaatc |
155 |
Q |
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| T |
10922533 |
ttatcaaagtattcgtatgccggcgtgcaagaaaagctttacaaggattcaaacaaaactatagattgagatatgcgggcatttttt-cctcgttaaatc |
10922631 |
T |
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| Q |
156 |
aaagccggccacgttcattgcagtgatcgtaacatgaatgtcttgttataagtgttttctatgtgttaatgttat |
230 |
Q |
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| T |
10922632 |
aaagccggccacgttcattgcagtgatcgtaacatgaatgtcttattataagtgttttctatgtgttaatgttat |
10922706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 227 - 346
Target Start/End: Original strand, 10935174 - 10935294
Alignment:
| Q |
227 |
ttataacattttaaagattacatatgcttctacaaatatttccttcatgtctaaatcacct-aaacaaaacactagcatattttctacaatgggggctat |
325 |
Q |
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| T |
10935174 |
ttataacattttaaagattacatatgcttctacaaatatttccttcatgtctaaatcacctaaaacaaaacactagcatcttttctacaatgggagctat |
10935273 |
T |
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| Q |
326 |
tccaactttctctctaatgat |
346 |
Q |
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| T |
10935274 |
tccaactttctctttaatgat |
10935294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 290
Target Start/End: Original strand, 10959734 - 10959778
Alignment:
| Q |
246 |
acatatgcttctacaaatatttccttcatgtctaaatcacctaaa |
290 |
Q |
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| T |
10959734 |
acatatgcttctacaagtctttcctacatgtataaatcacctaaa |
10959778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 153 - 211
Target Start/End: Original strand, 45407596 - 45407654
Alignment:
| Q |
153 |
atcaaagccggccacgttcattgcagtgatcgtaacatgaatgtcttgttataagtgtt |
211 |
Q |
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| T |
45407596 |
atcaaagccggccatgttcattgcagtaatcgtaacatgaatgtcttattataagtgtt |
45407654 |
T |
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