View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7829A_low_118 (Length: 344)
Name: NF7829A_low_118
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_118 |
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| [»] scaffold0305 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 41 - 329
Target Start/End: Original strand, 36526475 - 36526763
Alignment:
| Q |
41 |
gcttcttttagacctcttgcttctgcttctttgggttgtgggagacctttgtaccacgctgtctttgctttaatgaactcccatcgatcacctcttagac |
140 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
36526475 |
gcttcttttagacctctagcttctgcttctttgggttgtgggagacctttgtaccacgctgtcttcgctttaatgaactcccatcgatcacctcttagac |
36526574 |
T |
|
| Q |
141 |
acataccgaccccataacatccttaatccttaaaaattgctgcatcgacattgcacttcacttccccagctactggtctaatccaattctcttgtctgcg |
240 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |
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| T |
36526575 |
acataccgaccccataacatccttaatccttaaaaattgctgcgtcgacattgcacttcacttccccagctactggtctaatccacttctcttgtctgtg |
36526674 |
T |
|
| Q |
241 |
atccgccacgccactattgtggtattctccttgttctctcctgtgagaattgtagatgattattagtaatatgagatttattttcatat |
329 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36526675 |
atccgccacgtcactattgtggtattctccttgttctctcctatgagaattgtagatgattattagtaatatgagatttattttcatat |
36526763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 13 - 282
Target Start/End: Original strand, 37923804 - 37924071
Alignment:
| Q |
13 |
aaacctcatagtaccaagccacattatcgcttcttttagacctcttgcttctgcttctttgggttgtgggagacctttgtaccacgctgtctttgcttta |
112 |
Q |
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|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||| |
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| T |
37923804 |
aaacctcaaggtaccaagccattttatcgcttcttttagacctcttgcttctgcttctttgggttgtgggagacctttgtactatgttgtctttgcttta |
37923903 |
T |
|
| Q |
113 |
atgaactcccatcgatcacctcttagacacataccgaccccataacatccttaatccttaaaaattgctgcatcgacattgcacttcacttccccagcta |
212 |
Q |
| |
|
|||||||||| |||||| |||||||||||||||||||| | ||||| |||| ||||||||||||| |||||| |||||||||||||||||||| ||| |
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| T |
37923904 |
atgaactcccctcgatcccctcttagacacataccgactc--taacaaccttgttccttaaaaattgttgcatcaacattgcacttcacttccccgacta |
37924001 |
T |
|
| Q |
213 |
ctggtctaatccaattctcttgtctgcgatccgccacgccactattgtggtattctccttgttctctcct |
282 |
Q |
| |
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| ||| || |||| | || ||||||| |||| | || ||||||||||||||||||| ||||||||||| |
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| T |
37924002 |
ccggtttagtccactccttttgtctgtgatctgtcattacactattgtggtattctccatgttctctcct |
37924071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 16 - 282
Target Start/End: Complemental strand, 4430689 - 4430426
Alignment:
| Q |
16 |
cctcatagtaccaagccacattatcgcttcttttagacctcttgcttctgcttctttgggttgtgggagacctttgtaccacgctgtctttgctttaatg |
115 |
Q |
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|
|||||||||| ||||||| |||||||||| |||||||||| ||||| ||||||||||||||||||||||| ||||||||| | ||| ||||||| |||| |
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| T |
4430689 |
cctcatagtatcaagccatattatcgcttattttagaccttctgcttatgcttctttgggttgtgggagacttttgtaccatgatgtatttgcttaaatg |
4430590 |
T |
|
| Q |
116 |
aactcccatcgat-cacctcttagacacataccgaccccataacatccttaatccttaaaaattgctgcatcgacattgcacttcacttccccagctact |
214 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
4430589 |
aactcctctcgatacacctcttagacacataccgaccccataacatccttgatccttaaaaattgtcgcatcaacattgcacttcacttccccagctact |
4430490 |
T |
|
| Q |
215 |
ggtctaatccaattctcttgtctgcgatccgccacgccactattgtggtattctccttgttctctcct |
282 |
Q |
| |
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||||||||||| |||||||| ||||||||| ||| | |||||||||| ||||||||||||||| |
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| T |
4430489 |
ggtctaatccacctctcttgt----gatccgccattccattgttgtggtattttccttgttctctcct |
4430426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 22 - 225
Target Start/End: Complemental strand, 23269949 - 23269746
Alignment:
| Q |
22 |
agtaccaagccacattatcgcttcttttagacctcttgcttctgcttctttgggttgtgggagacctttgtaccacgctgtctttgctttaatgaactcc |
121 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||||||| || || |||||||| | ||||||| ||||||| |||||||| ||| | ||||||||| |
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|
| T |
23269949 |
agtaccaagccactttctcgcttcttttagacctcttgcttccgcctcattgggttgagagagacctctgtaccaagctgtcttcgctctcatgaactcc |
23269850 |
T |
|
| Q |
122 |
catcgatcacctcttagacacataccgaccccataacatccttaatccttaaaaattgctgcatcgacattgcacttcacttccccagctactggtctaa |
221 |
Q |
| |
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| |||||| ||| | | |||||| | | ||||||||| |||| ||||||||| |||| || |||||||| |||||||||||| |||||| | ||||| |
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| T |
23269849 |
cctcgatcccctgtcaagcacatatcaatcccataacaaccttgatccttaaagattgtcgcgtcgacattacacttcacttccgcagctaacgatctaa |
23269750 |
T |
|
| Q |
222 |
tcca |
225 |
Q |
| |
|
|||| |
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| T |
23269749 |
tcca |
23269746 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 89; Significance: 7e-43; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 36 - 208
Target Start/End: Complemental strand, 10786022 - 10785850
Alignment:
| Q |
36 |
ttatcgcttcttttagacctcttgcttctgcttctttgggttgtgggagacctttgtaccacgctgtctttgctttaatgaactcccatcgatcacctct |
135 |
Q |
| |
|
|||||| |||||||||||||||||||| | |||||||||||||||||| ||||||||||| | |||||| ||| |||||||||||| |||||| ||||| |
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| T |
10786022 |
ttatcgtttcttttagacctcttgcttttacttctttgggttgtgggatgcctttgtaccaagttgtcttcgctctaatgaactcccctcgatcccctct |
10785923 |
T |
|
| Q |
136 |
tagacacataccgaccccataacatccttaatccttaaaaattgctgcatcgacattgcacttcacttcccca |
208 |
Q |
| |
|
| ||||||||||| ||||||||| |||| ||||||||||||| || ||| ||||| ||||||||||||||| |
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| T |
10785922 |
caaacacataccgatcccataacaaccttgttccttaaaaattgttgtatcaacattacacttcacttcccca |
10785850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 13 - 207
Target Start/End: Original strand, 40728378 - 40728566
Alignment:
| Q |
13 |
aaacctcatagtaccaagccacattatcgcttcttttagacctcttgcttctgcttctttgggttgtgggagacctttgtaccacgctgtctttgcttta |
112 |
Q |
| |
|
|||||||| |||||||| ||| || ||||||| ||||||||||||||||||||||||||||||| | |||||||| | ||||| | |||||| ||| || |
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|
| T |
40728378 |
aaacctcaaagtaccaaaccattttgtcgcttcctttagacctcttgcttctgcttctttgggttattggagacctgtataccaagatgtcttggctcta |
40728477 |
T |
|
| Q |
113 |
atgaactcccatcgatcacctcttagacacataccgaccccataa---catccttaatccttaaaaattgctgcatcgacattgcacttcacttcccc |
207 |
Q |
| |
|
||||||| || |||||||| ||||| |||||||||||| | ||||| |||||||||||||| |||||| |||||| ||||||| ||||| |
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|
| T |
40728478 |
atgaact---at------cctcttaggcacattccgaccccataaccgcctccttgatccttaaaaattgttgcatctacattgtacttcacctcccc |
40728566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 36 - 156
Target Start/End: Original strand, 13019138 - 13019258
Alignment:
| Q |
36 |
ttatcgcttcttttagacctcttgcttctgcttctttgggttgtgggagacctttgtaccacgctgtctttgctttaatgaactcccatcgatcacctct |
135 |
Q |
| |
|
||||||||||||||| ||| ||||||||||| || |||| ||||||||| ||||| |||| | |||||| || |||||||||||| || ||| ||||| |
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|
| T |
13019138 |
ttatcgcttcttttaaaccacttgcttctgcctcgttggattgtgggaggcctttaaaccaagttgtcttcgccctaatgaactcccctcaatcccctct |
13019237 |
T |
|
| Q |
136 |
tagacacataccgaccccata |
156 |
Q |
| |
|
|||| ||| ||||||||||| |
|
|
| T |
13019238 |
aagacgcatgccgaccccata |
13019258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 13 - 225
Target Start/End: Original strand, 29468537 - 29468749
Alignment:
| Q |
13 |
aaacctcatagtaccaagccacattatcgcttcttttagacctcttgcttctgcttctttgggttgtgggagacctttgtaccacgctgtctttgcttta |
112 |
Q |
| |
|
|||||||| ||||||||||||| |||| ||| ||||||||||| ||||| |||||||| ||||||||||||||||| ||||| | |||||| ||| | |
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|
| T |
29468537 |
aaacctcaaagtaccaagccactttatttctttttttagacctcgtgctttcgcttctttaggttgtgggagacctttataccaagttgtcttcgctcca |
29468636 |
T |
|
| Q |
113 |
atgaactcccatcgatcacctcttagacacataccgaccccataacatccttaatcctt-aaaaattgctgcatcgacattgcacttcacttccccagct |
211 |
Q |
| |
|
|||||||||| ||| | |||||||| ||||| | || ||||||||||| || |||||| ||||||| |||| ||||||||||| | ||| || | ||| |
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|
| T |
29468637 |
atgaactcccctcgcacccctcttaggcacattctga-cccataacatcattgatccttaaaaaattactgcgtcgacattgcaatccacctcactggct |
29468735 |
T |
|
| Q |
212 |
actggtctaatcca |
225 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
29468736 |
accggtctaatcca |
29468749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0305 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0305
Description:
Target: scaffold0305; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 40 - 192
Target Start/End: Original strand, 18846 - 18998
Alignment:
| Q |
40 |
cgcttcttttagacctcttgcttctgcttctttgggttgtgggagacctttgtaccacgctgtctttgct-ttaatgaactcccatcgatcacctcttag |
138 |
Q |
| |
|
||||||||||| ||||||||||| || || |||||||||||||||||||| |||| | |||||| ||| |||| |||||| | |||| ||||| || |
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| T |
18846 |
cgcttcttttaaacctcttgcttacgcctcattgggttgtgggagacctttaaaccaagttgtcttcgctcccaatgtactccccttgatcccctctaag |
18945 |
T |
|
| Q |
139 |
acacataccgaccccataacatccttaatccttaaaaattgctgcatcgacatt |
192 |
Q |
| |
|
|||||| |||||| | |||||||||| ||||| ||||||| || ||||||||| |
|
|
| T |
18946 |
acacatgtcgacccaacaacatccttactcctt-aaaattgttgtatcgacatt |
18998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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