View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_122 (Length: 341)
Name: NF7829A_low_122
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_122 |
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Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 4 - 335
Target Start/End: Complemental strand, 34314723 - 34314390
Alignment:
| Q |
4 |
aatatagacttatagagaagaataaagaagataaagaatgagactgcaattccaataaaatacaaagtcttgaataataatgacaacttgatacaagaga |
103 |
Q |
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| T |
34314723 |
aatatagacttatagagaagaataaagaagataaagaatgagactgcaattccaataaaatacaaagtcttgaataataatgacaacttgatacaagaga |
34314624 |
T |
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| Q |
104 |
gtagtatatat--tattaatttctannnnnnnnnaaggaatcaaaacggaatatattaaaaacaaagagactatttccttaacataaagtatgtaagaga |
201 |
Q |
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| T |
34314623 |
gtagtatatatattattaattcctatttttttttacgaaatcaaaatgaaatatattaagaactaagagtctattcccttagcataaaatatgtaagaga |
34314524 |
T |
|
| Q |
202 |
aaatagcagaaaagttacaatagagattcagacagaatgatcacaaattaactgattctcaaacatatttacaatatcaaccatcgtgaactctcacaaa |
301 |
Q |
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| T |
34314523 |
agatagtcgaaaagttacgatagagattcatacagaatgatcacaaattagctgattccgaaacatatttataatatcaaccatcgtgaactctcacaaa |
34314424 |
T |
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| Q |
302 |
caaattgttcacttgatataatactcctcttttg |
335 |
Q |
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| T |
34314423 |
caaattgttcgcttgatataacactcctcttttg |
34314390 |
T |
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