View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7829A_low_125 (Length: 340)

Name: NF7829A_low_125
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7829A_low_125
NF7829A_low_125
[»] chr8 (4 HSPs)
chr8 (15-340)||(140321-140646)
chr8 (53-177)||(4700702-4700826)
chr8 (47-144)||(24126076-24126173)
chr8 (35-203)||(24322668-24322835)
[»] chr6 (2 HSPs)
chr6 (47-144)||(10404532-10404629)
chr6 (35-121)||(29337053-29337139)
[»] chr5 (2 HSPs)
chr5 (35-144)||(6821119-6821228)
chr5 (35-141)||(434339-434445)
[»] chr3 (2 HSPs)
chr3 (35-144)||(6172848-6172957)
chr3 (35-144)||(6252192-6252301)
[»] chr1 (7 HSPs)
chr1 (47-144)||(19036482-19036579)
chr1 (36-124)||(32499881-32499969)
chr1 (44-124)||(15585897-15585977)
chr1 (47-203)||(28040022-28040177)
chr1 (46-142)||(36154219-36154315)
chr1 (35-116)||(7793898-7793979)
chr1 (35-142)||(37201299-37201406)
[»] chr2 (4 HSPs)
chr2 (47-217)||(9684315-9684485)
chr2 (35-124)||(8589110-8589199)
chr2 (256-310)||(9684227-9684281)
chr2 (35-81)||(45465859-45465905)
[»] chr7 (1 HSPs)
chr7 (47-144)||(19278227-19278324)
[»] chr4 (2 HSPs)
chr4 (39-124)||(23808671-23808756)
chr4 (38-71)||(24403650-24403683)


Alignment Details
Target: chr8 (Bit Score: 286; Significance: 1e-160; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 15 - 340
Target Start/End: Original strand, 140321 - 140646
Alignment:
Q  15 tggacatcattatacaaaataaaagtttggtgatacccatgcatgatcgaagtagaagaagctcactctaaggatcacttagctgtggaagaaaatgcat 114  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  140321 tggacgtcattagacaaaataaaagtttggtgatacccatgcatgatcgaagtagaagaagctcactctaaggatcacttagctgtggaagaaaatgcat 140420  T
Q  115 taactcaacagtcctggaagctctcttcatcgttgtcccttggataaaaccttgatctcgactcacagcccttctgagcagtttcacccgcaatgtcagc 214  Q
    |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||    
T  140421 taactcaacagtcctggaagctctcttcattgttgtccctcggataaaaccttgatctcgactcacaacccttccgagcaatttcacccgcaatgtcagc 140520  T
Q  215 ctcagcctcctaatgtccaaaggagacaacattcacgtttgttatttccatcacataaaggccaaaatattttagttttacaaatattcaattcaaaacc 314  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  140521 ctcagcctcctaatgtccaaaggagacaacattcacgttgcttatttccatcacataaaggccaaaatattttagttttacaaatattcaattcaaaacc 140620  T
Q  315 taaccctggcccaaactcttgaatga 340  Q
    ||||| ||||||||||||||||||||    
T  140621 taaccttggcccaaactcttgaatga 140646  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 53 - 177
Target Start/End: Original strand, 4700702 - 4700826
Alignment:
Q  53 atgcatgatcgaagtagaagaagctcactctaaggatcacttagctgtggaagaaaatgcattaactcaacagtcctggaagctctcttcatcgttgtcc 152  Q
    |||||||||||||||||||||||||| |||| ||||||    | || | ||||| |||||||||||||||||  |||||||||||||||||| ||   ||    
T  4700702 atgcatgatcgaagtagaagaagctcgctctgaggatcttgcaactattgaagacaatgcattaactcaacaaccctggaagctctcttcatggtcaacc 4700801  T
Q  153 cttggataaaaccttgatctcgact 177  Q
    | | ||||||||||| |||||||||    
T  4700802 cctcgataaaacctttatctcgact 4700826  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 144
Target Start/End: Original strand, 24126076 - 24126173
Alignment:
Q  47 atacccatgcatgatcgaagtagaagaagctcactctaaggatcacttagctgtggaagaaaatgcattaactcaacagtcctggaagctctcttcat 144  Q
    ||||||||||| ||||||||||||||||||||||||| |||||  | || | | ||||||| |||||| || |||  || ||||||| ||||||||||    
T  24126076 atacccatgcacgatcgaagtagaagaagctcactctgaggatgtcgtaaccgaggaagaagatgcatcaagtcagtagccctggaaactctcttcat 24126173  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 203
Target Start/End: Original strand, 24322668 - 24322835
Alignment:
Q  35 aaaagtttggtgatacccatgcatgatcgaagtagaagaagctcactctaaggatcacttagctgtggaagaaaatgcattaactcaacagtcctggaag 134  Q
    |||||||| | ||||| ||||||||||||||||||||||| |||||| |   | || | ||  |||||||||| |||||||||||||  || ||  ||||    
T  24322668 aaaagtttcgcgatactcatgcatgatcgaagtagaagaaactcactattcagctctcgtaattgtggaagaagatgcattaactcagtag-cccagaag 24322766  T
Q  135 ctctcttcatcgttgtcccttggataaaaccttgatctcgactcacagcccttctgagcagtttcaccc 203  Q
    |||||||||| | |  ||| | |||||||| |  |||||| || ||||||| || ||||| ||||||||    
T  24322767 ctctcttcatgggtagcccctcgataaaacatgtatctcggctaacagcccctccgagcaatttcaccc 24322835  T

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Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 47 - 144
Target Start/End: Original strand, 10404532 - 10404629
Alignment:
Q  47 atacccatgcatgatcgaagtagaagaagctcactctaaggatcacttagctgtggaagaaaatgcattaactcaacagtcctggaagctctcttcat 144  Q
    |||||||||||||||||||||||||||||||||||||||||||| | || || || |||||   ||||||||||||||  ||||||||||||||||||    
T  10404532 atacccatgcatgatcgaagtagaagaagctcactctaaggatctcgtaactatgaaagaaggagcattaactcaacaaccctggaagctctcttcat 10404629  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 35 - 121
Target Start/End: Complemental strand, 29337139 - 29337053
Alignment:
Q  35 aaaagtttggtgatacccatgcatgatcgaagtagaagaagctcactctaaggatcacttagctgtggaagaaaatgcattaactca 121  Q
    |||| ||||| ||||||| |||| ||| ||||||||||||||||||||| |||||| | || ||||||||||| |||||||||||||    
T  29337139 aaaactttggcgatacccttgcacgattgaagtagaagaagctcactctgaggatctcataactgtggaagaagatgcattaactca 29337053  T

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Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 35 - 144
Target Start/End: Complemental strand, 6821228 - 6821119
Alignment:
Q  35 aaaagtttggtgatacccatgcatgatcgaagtagaagaagctcactctaaggatcacttagctgtggaagaaaatgcattaactcaacagtcctggaag 134  Q
    |||| |||||||||||||||| ||||||||||||||||||||||| | | || ||| ||||| |||||||||| ||||| ||||||||||  |||| |||    
T  6821228 aaaactttggtgatacccatgtatgatcgaagtagaagaagctcagtatgagaatctcttagttgtggaagaagatgcactaactcaacaaccctgaaag 6821129  T
Q  135 ctctcttcat 144  Q
    ||||||||||    
T  6821128 ctctcttcat 6821119  T

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Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 35 - 141
Target Start/End: Original strand, 434339 - 434445
Alignment:
Q  35 aaaagtttggtgatacccatgcatgatcgaagtagaagaagctcactctaaggatcacttagctgtggaagaaaatgcattaactcaacagtcctggaag 134  Q
    ||||||||||||||||||||||||||||||||||||| || ||||| || |||||| | || | |||||||||  |||||||||||||||   |||||||    
T  434339 aaaagtttggtgatacccatgcatgatcgaagtagaaaaatctcacgctgaggatctcgtaaccgtggaagaaggtgcattaactcaacaactctggaag 434438  T
Q  135 ctctctt 141  Q
    |||||||    
T  434439 ctctctt 434445  T

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Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 35 - 144
Target Start/End: Complemental strand, 6172957 - 6172848
Alignment:
Q  35 aaaagtttggtgatacccatgcatgatcgaagtagaagaagctcactctaaggatcacttagctgtggaagaaaatgcattaactcaacagtcctggaag 134  Q
    |||| ||||| |||||||||||||||||||||||||||| ||||||||| |||||| | || |||||||||||  |||||||||||||||   ||||||     
T  6172957 aaaattttggcgatacccatgcatgatcgaagtagaagatgctcactctgaggatctcgtaactgtggaagaaggtgcattaactcaacaacactggaaa 6172858  T
Q  135 ctctcttcat 144  Q
    ||||||||||    
T  6172857 ctctcttcat 6172848  T

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Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 35 - 144
Target Start/End: Complemental strand, 6252301 - 6252192
Alignment:
Q  35 aaaagtttggtgatacccatgcatgatcgaagtagaagaagctcactctaaggatcacttagctgtggaagaaaatgcattaactcaacagtcctggaag 134  Q
    |||| ||||| |||||||||||||||||||||||||||| ||||||||| |||||| | || |||||||||||  |||||||||||||||   ||||||     
T  6252301 aaaattttggcgatacccatgcatgatcgaagtagaagatgctcactctgaggatctcgtaactgtggaagaagttgcattaactcaacaacactggaaa 6252202  T
Q  135 ctctcttcat 144  Q
    ||||||||||    
T  6252201 ctctcttcat 6252192  T

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Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 47 - 144
Target Start/End: Original strand, 19036482 - 19036579
Alignment:
Q  47 atacccatgcatgatcgaagtagaagaagctcactctaaggatcacttagctgtggaagaaaatgcattaactcaacagtcctggaagctctcttcat 144  Q
    |||||||||||  |||||||||||||||||||||||| |||||| | || ||| ||||||| ||||||||||||| ||| ||||||||||||||||||    
T  19036482 atacccatgcacaatcgaagtagaagaagctcactctgaggatcccgtaactgaggaagaagatgcattaactcagcagccctggaagctctcttcat 19036579  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 36 - 124
Target Start/End: Complemental strand, 32499969 - 32499881
Alignment:
Q  36 aaagtttggtgatacccatgcatgatcgaagtagaagaagctcactctaaggatcacttagctgtggaagaaaatgcattaactcaaca 124  Q
    ||||||||| ||||||||||||||||||||||||||||| |||| | ||  |||| ||||  | |||||||||||||||||||||||||    
T  32499969 aaagtttggcgatacccatgcatgatcgaagtagaagaaactcattttagagatctcttaattatggaagaaaatgcattaactcaaca 32499881  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 44 - 124
Target Start/End: Original strand, 15585897 - 15585977
Alignment:
Q  44 gtgatacccatgcatgatcgaagtagaagaagctcactctaaggatcacttagctgtggaagaaaatgcattaactcaaca 124  Q
    ||||||||||||||||||||||||| || |||| |||| || || || ||||  |||||||||| ||||||||||||||||    
T  15585897 gtgatacccatgcatgatcgaagtataataagcccactttatgggtctcttaattgtggaagaagatgcattaactcaaca 15585977  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 47 - 203
Target Start/End: Complemental strand, 28040177 - 28040022
Alignment:
Q  47 atacccatgcatgatcgaagtagaagaagctcactctaaggatcacttagctgtggaagaaaatgcattaactcaacagtcctggaagctctcttcatcg 146  Q
    ||||||||||| ||||||||||||||||||| ||||| |||||  | || ||| ||||||| ||| ||||| | | ||| |||| ||||||||||||| |    
T  28040177 atacccatgcacgatcgaagtagaagaagctaactctgaggattccgtaactgaggaagaagatgtattaa-ttagcagccctgtaagctctcttcatgg 28040079  T
Q  147 ttgtcccttggataaaaccttgatctcgactcacagcccttctgagcagtttcaccc 203  Q
     |  ||| |  |||||||||| |||||| || | ||||| || ||||| ||||||||    
T  28040078 ctaacccctcaataaaacctttatctcgtctaaaagcccctccgagcaatttcaccc 28040022  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 46 - 142
Target Start/End: Complemental strand, 36154315 - 36154219
Alignment:
Q  46 gatacccatgcatgatcgaagtagaagaagctcactctaaggatcacttagctgtggaagaaaatgcattaactcaacagtcctggaagctctcttc 142  Q
    ||||| |||||||||| ||| | ||||||| ||||||| |||| | ||||| |||| ||||| |||||||||||||| ||  |||||| ||||||||    
T  36154315 gatactcatgcatgattgaaatggaagaagttcactcttaggaccccttagttgtgaaagaagatgcattaactcaatagctctggaaactctcttc 36154219  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 35 - 116
Target Start/End: Complemental strand, 7793979 - 7793898
Alignment:
Q  35 aaaagtttggtgatacccatgcatgatcgaagtagaagaagctcactctaaggatcacttagctgtggaagaaaatgcatta 116  Q
    |||| ||||||||||||||  |||||||||||||||||||||||| | | | |||| | ||  |||||||||||| ||||||    
T  7793979 aaaattttggtgatacccaaacatgatcgaagtagaagaagctcattatgacgatctcgtaattgtggaagaaaaagcatta 7793898  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 35 - 142
Target Start/End: Original strand, 37201299 - 37201406
Alignment:
Q  35 aaaagtttggtgatacccatgcatgatcgaagtagaagaagctcactctaaggatcacttagctgtggaagaaaatgcattaactcaacagtcctggaag 134  Q
    |||| |||||||||||||||| ||| | |||||| || ||| ||||| | ||||||   ||  ||| |||||| || ||||||||||  |||||||||||    
T  37201299 aaaaatttggtgatacccatgtatgcttgaagtaaaataagttcactttgaggatcttgtaagtgtagaagaagatacattaactcagtagtcctggaag 37201398  T
Q  135 ctctcttc 142  Q
    ||||||||    
T  37201399 ctctcttc 37201406  T

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Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 47 - 217
Target Start/End: Complemental strand, 9684485 - 9684315
Alignment:
Q  47 atacccatgcatgatcgaagtagaagaagctcactctaaggatcacttagctgtggaagaaaatgcattaactcaacagtcctggaagctctcttcatcg 146  Q
    ||||||||||| | ||||||||||||||||||||||| |||||| | ||  || ||||||| ||||||||||||| ||| |||| ||||||||||||| |    
T  9684485 atacccatgcacgttcgaagtagaagaagctcactctgaggatcccgtaagtgaggaagaagatgcattaactcagcagccctgaaagctctcttcatgg 9684386  T
Q  147 ttgtcccttggataaaaccttgatctcgactcacagcccttctgagcagtttcacccgcaatgtcagcctc 217  Q
        ||| | ||||||||||| |||||| || |||||||  | ||||| |||||||| ||| ||| |||||    
T  9684385 ccaacccctcgataaaacctttatctcggctaacagccccaccgagcaatttcacccccaacgtcggcctc 9684315  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 35 - 124
Target Start/End: Original strand, 8589110 - 8589199
Alignment:
Q  35 aaaagtttggtgatacccatgcatgatcgaagtagaagaagctcactctaaggatcacttagctgtggaagaaaatgcattaactcaaca 124  Q
    |||||||| | ||| ||||||||||||||||||||| |||| ||||||  |||||| ||||  |||||||||| ||||||||||||||||    
T  8589110 aaaagtttagcgattcccatgcatgatcgaagtagaggaagttcactcggaggatcccttaattgtggaagaatatgcattaactcaaca 8589199  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 256 - 310
Target Start/End: Complemental strand, 9684281 - 9684227
Alignment:
Q  256 ttatttccatcacataaaggccaaaatattttagttttacaaatattcaattcaa 310  Q
    ||||| ||||||||| |||||||||| |||| ||| |||||||||||||||||||    
T  9684281 ttattaccatcacatgaaggccaaaagatttcagtcttacaaatattcaattcaa 9684227  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 81
Target Start/End: Original strand, 45465859 - 45465905
Alignment:
Q  35 aaaagtttggtgatacccatgcatgatcgaagtagaagaagctcact 81  Q
    ||||| |||||||||||||| ||||||| |||||||||||| |||||    
T  45465859 aaaagattggtgatacccatacatgatcaaagtagaagaagttcact 45465905  T

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Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 47 - 144
Target Start/End: Original strand, 19278227 - 19278324
Alignment:
Q  47 atacccatgcatgatcgaagtagaagaagctcactctaaggatcacttagctgtggaagaaaatgcattaactcaacagtcctggaagctctcttcat 144  Q
    ||||||||||| |||| |||||||||||||||||| | |||||| | || ||| ||||||| ||||||||||||| ||| |||||||||||| |||||    
T  19278227 atacccatgcacgatcaaagtagaagaagctcactatgaggatcccgtaactgaggaagaagatgcattaactcagcagccctggaagctctattcat 19278324  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 124
Target Start/End: Complemental strand, 23808756 - 23808671
Alignment:
Q  39 gtttggtgatacccatgcatgatcgaagtagaagaagctcactctaaggatcacttagctgtggaagaaaatgcattaactcaaca 124  Q
    ||||| |||||| |||||||| ||||||||||| ||||||||  | |||| | |||| ||||||||||| ||| ||||||||||||    
T  23808756 gtttgatgatactcatgcatggtcgaagtagaataagctcacgttgaggaccccttaactgtggaagaagatgtattaactcaaca 23808671  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 24403650 - 24403683
Alignment:
Q  38 agtttggtgatacccatgcatgatcgaagtagaa 71  Q
    ||||||||||||| ||||||||||||||||||||    
T  24403650 agtttggtgatactcatgcatgatcgaagtagaa 24403683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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