View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_13 (Length: 515)
Name: NF7829A_low_13
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 437; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 19 - 499
Target Start/End: Complemental strand, 1414502 - 1414021
Alignment:
| Q |
19 |
catcagaagctcttcctgatatgtttccaaagaagcttattccattaggaggtt-aacacttgtatatgttgcgtatatagttccagtatctgaatttga |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
1414502 |
catcagaagctcttcctgatatgtttccaaagaagcttattccattaggaggttgaacacttgtatatgttgcatatatagttccagtatctgaatttga |
1414403 |
T |
|
| Q |
118 |
gtcaccaaagttataaattgcagggtacacacatttgtcacttgaaacttgaataaatttacatgtcacatacaggttgaaacaccaaagtacatgaatt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1414402 |
gtcaccaaagttataaattgcagggtacacacatttgtcacttgaaacttgaataaatttacatgtcacatacaggttgaaacaccaaagtacatgaatt |
1414303 |
T |
|
| Q |
218 |
aacctcatgaaattcatgaggctaattcatagaaattttaagttgtacactaatatataaacaacgacaattttgtcaaaacgtaaatttgacataatgt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
1414302 |
aacctcatgaaattcatgaggctaattcatagaaattttaagttgtacactaatatataaacaatgacaattttgtcaaaacgtaaatttgacataatgt |
1414203 |
T |
|
| Q |
318 |
gtttcatgctttatttactgatcatgctagaatgctttgggacaccatgcttttggatcaaacacttgtgagnnnnnnntgcctaacaatagctttgaga |
417 |
Q |
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|||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
1414202 |
gtttcatgctgtatttacggatcatgctagaatgctttgggacaccatgcttttggatcaaacacttgtgagaaaaaaatgcctaacaatagctttgaga |
1414103 |
T |
|
| Q |
418 |
cacgtgttggataaaaagacagagagatgggattgacacaaacattagacaatggtaatcttttttacggtactaatgatgt |
499 |
Q |
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| T |
1414102 |
cacgtgttggataaaaagacagagagatgggattgacacaaacattagacaatggtaatcttttttacggtactaatgatgt |
1414021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 19 - 247
Target Start/End: Complemental strand, 1420048 - 1419822
Alignment:
| Q |
19 |
catcagaagctcttcctgatatgtttccaaagaagcttattccattaggaggttaac-acttgtatatgttgcgtatatagttccagtatctgaatttga |
117 |
Q |
| |
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||||||||||||| |||||||||||||||||| ||||| ||||||||||||| | || | | ||||| ||| ||||||||||||||||||||| |
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| T |
1420048 |
catcagaagctctccctgatatgtttccaaag---cttatgccattaggaggttgattacataagaaagttgcatatgcagttccagtatctgaatttga |
1419952 |
T |
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| Q |
118 |
gtcaccaaagttataaattgcagggtacacacatttgtcacttgaaacttgaataaatttacatgtcacatacaggttgaaacaccaaagtacatgaatt |
217 |
Q |
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||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
1419951 |
gtcaccaaagttataaattgcagggtacacacattcatgacttgaaacttgaataaatgtacatgtcacatacaggttgaaacaccaaagtacatgaatt |
1419852 |
T |
|
| Q |
218 |
aacctcatgaaattcatgaggctaattcat |
247 |
Q |
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|||||||| |||||||||||||||||||| |
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| T |
1419851 |
aacctcatagaattcatgaggctaattcat |
1419822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 19 - 154
Target Start/End: Complemental strand, 1411126 - 1410990
Alignment:
| Q |
19 |
catcagaagctcttcctgatatgtttccaaagaagcttattccattaggaggtt-aacacttgtatatgttgcgtatatagttccagtatctgaatttga |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||| |||| ||||||| |||| |||||| ||||| |||||||| |
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| T |
1411126 |
catcagaagctcttcctgatatgtttccaaagaagcttattccgttaggagattgaacacctgtaaatgttgcatatacagttccggtatccgaatttga |
1411027 |
T |
|
| Q |
118 |
gtcaccaaagttataaattgcagggtacacacatttg |
154 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
1411026 |
atcaccaaagttataaattgcagggtacacacatttg |
1410990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 19 - 153
Target Start/End: Complemental strand, 1408244 - 1408109
Alignment:
| Q |
19 |
catcagaagctcttcctgatatgtttccaaagaagcttattccattaggaggt-taacacttgtatatgttgcgtatatagttccagtatctgaatttga |
117 |
Q |
| |
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|||||||||||||||||| || |||||||| ||||||| ||||||||||| ||||| ||| ||| |||| | | | |||||||||||||||||| |
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| T |
1408244 |
catcagaagctcttcctgtggtgcttccaaagtagcttataccattaggaggcgtaacagctgtgtatattgcatttgctgctccagtatctgaatttga |
1408145 |
T |
|
| Q |
118 |
gtcaccaaagttataaattgcagggtacacacattt |
153 |
Q |
| |
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||||||||| || ||||||||||||||| ||||||| |
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| T |
1408144 |
gtcaccaaaattgtaaattgcagggtactcacattt |
1408109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 155 - 236
Target Start/End: Complemental strand, 1410965 - 1410884
Alignment:
| Q |
155 |
tcacttgaaacttgaataaatttacatgtcacatacaggttgaaacaccaaagtacatgaattaacctcatgaaattcatga |
236 |
Q |
| |
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|||||||| |||||||||||| |||||| |||||| || |||||||||||||||| |||||||| |||||| ||||||||| |
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| T |
1410965 |
tcacttgagacttgaataaatgtacatgccacataaagattgaaacaccaaagtatatgaattagcctcatagaattcatga |
1410884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 164 - 234
Target Start/End: Complemental strand, 1408080 - 1408010
Alignment:
| Q |
164 |
acttgaataaatttacatgtcacatacaggttgaaacaccaaagtacatgaattaacctcatgaaattcat |
234 |
Q |
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|||||||| ||| || |||||||| |||| |||||| ||||||||||||||||||| ||||| ||||||| |
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| T |
1408080 |
acttgaatgaatgtaaatgtcacacacagattgaaaaaccaaagtacatgaattaatctcatagaattcat |
1408010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 29 - 153
Target Start/End: Complemental strand, 3600632 - 3600507
Alignment:
| Q |
29 |
tcttcctgatatgtttccaaagaagcttattccattaggaggtt-aacacttgtatatgttgcgtatatagttccagtatctgaatttgagtcaccaaag |
127 |
Q |
| |
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||||||||| ||| |||||||||||||||| ||||||||| | | |||| || |||||| ||| || ||||||||||||||| |||||||||||| |
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| T |
3600632 |
tcttcctgagatgcttccaaagaagcttataccattaggatgctcaacagctgccattgttgcatatccagctccagtatctgaattggagtcaccaaag |
3600533 |
T |
|
| Q |
128 |
ttataaattgcagggtacacacattt |
153 |
Q |
| |
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|| || ||||| ||||| |||||||| |
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| T |
3600532 |
ttgtatattgctgggtagacacattt |
3600507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 100 - 153
Target Start/End: Complemental strand, 14339427 - 14339374
Alignment:
| Q |
100 |
tccagtatctgaatttgagtcaccaaagttataaattgcagggtacacacattt |
153 |
Q |
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||||||||||||||| |||||||||||||| || ||||| ||||| |||||||| |
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| T |
14339427 |
tccagtatctgaattggagtcaccaaagttgtatattgctgggtagacacattt |
14339374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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