View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7829A_low_131 (Length: 334)
Name: NF7829A_low_131
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_131 |
 | |
|
| [»] scaffold0661 (1 HSPs) |
| | |
|
| [»] scaffold0084 (1 HSPs) |
| | |
|
| [»] scaffold0012 (1 HSPs) |
| | |
|
| [»] scaffold0126 (1 HSPs) |
| | |
|
| [»] scaffold0218 (1 HSPs) |
| | |
|
| [»] scaffold0035 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 4 - 279
Target Start/End: Complemental strand, 16848069 - 16847794
Alignment:
| Q |
4 |
gagtttggtgttcctccaacaaatgttgatcaagaccaaaagaaactcaggcttttcccgttcactttaaacggtaaagctaaagactggttattgactt |
103 |
Q |
| |
|
|||||| ||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
16848069 |
gagttttgtgttcctccagcaaatgttaatgaagaccaaaagaaactcaggcttttcccgttcactttaattggtaaagctaaagactggttattgactt |
16847970 |
T |
|
| Q |
104 |
tgcctaatgggactattcaaacatgggaggaattagagcttaagtttctagagaagtatttccctatgtccaagtacttggataagaagcaagaaatagc |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16847969 |
tgcctaatgggactattcaaacatgggaggaattagagcttaagtttctagagaagtatttccctatgtccaagtacttggataagaagcaagaaatagc |
16847870 |
T |
|
| Q |
204 |
aagcttccggcaaggtgaagatgaatcactttatgatgcttgggaaaggttcaatttgcttctgaagagatgtcca |
279 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16847869 |
aagcttccggcaaggtgaaggtgaatcactttatgatgcttgggaaaggttcaatttgcttctgaagagatgtcca |
16847794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 4 - 251
Target Start/End: Original strand, 20965364 - 20965611
Alignment:
| Q |
4 |
gagtttggtgttcctccaacaaatgttgatcaagaccaaaagaaactcaggcttttcccgttcactttaaacggtaaagctaaagactggttattgactt |
103 |
Q |
| |
|
|||||| ||||||||||| |||||||| | |||| |||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
20965364 |
gagttttgtgttcctccagcaaatgttactgaagatcaaaagaaactcagactattcccgttcactttaaccggtaaagctaaagactggttattgactt |
20965463 |
T |
|
| Q |
104 |
tgcctaatgggactattcaaacatgggaggaattagagcttaagtttctagagaagtatttccctatgtccaagtacttggataagaagcaagaaatagc |
203 |
Q |
| |
|
||||||||||||| || |||| |||||| || | ||||| |||||| ||||||||| ||||||||||||||| ||| |||||||||| ||||| ||||| |
|
|
| T |
20965464 |
tgcctaatgggaccatccaaaaatgggatgagctggagctgaagtttttagagaagtttttccctatgtccaaatacctggataagaaacaagagatagc |
20965563 |
T |
|
| Q |
204 |
aagcttccggcaaggtgaagatgaatcactttatgatgcttgggaaag |
251 |
Q |
| |
|
| ||| ||||||| |||| ||| ||||||||||||||||||||||| |
|
|
| T |
20965564 |
caactttaggcaaggggaaggtgagtcactttatgatgcttgggaaag |
20965611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 4 - 279
Target Start/End: Complemental strand, 5896173 - 5895898
Alignment:
| Q |
4 |
gagtttggtgttcctccaacaaatgttgatcaagaccaaaagaaactcaggcttttcccgttcactttaaacggtaaagctaaagactggttattgactt |
103 |
Q |
| |
|
|||||| ||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
5896173 |
gagttttgtgttcctccagcaaatgttaatgaagaccaaaagaaactcaggcttttcccgttcactttaattggtaaagctaaagactggttattgactt |
5896074 |
T |
|
| Q |
104 |
tgcctaatgggactattcaaacatgggaggaattagagcttaagtttctagagaagtatttccctatgtccaagtacttggataagaagcaagaaatagc |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5896073 |
tgcctaatgggactattcaaacatgggaggaattagagcttaagtttatagagaagtatttccctatgtccaagtacttggataagaagcaagaaatagc |
5895974 |
T |
|
| Q |
204 |
aagcttccggcaaggtgaagatgaatcactttatgatgcttgggaaaggttcaatttgcttctgaagagatgtcca |
279 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5895973 |
aagcttccggcaaggtgaaggtgaatcactttatgatgcttgggaaaggttcaatttgcttctgaagagatgtcca |
5895898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 4 - 279
Target Start/End: Complemental strand, 16322789 - 16322514
Alignment:
| Q |
4 |
gagtttggtgttcctccaacaaatgttgatcaagaccaaaagaaactcaggcttttcccgttcactttaaacggtaaagctaaagactggttattgactt |
103 |
Q |
| |
|
|||||| ||||||||||| |||||||| || |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
16322789 |
gagttttgtgttcctccagcaaatgttaatgaagaccaaaagaaactcaggctattcccgttcactttaatcggtaaagctaaagactggttattgactt |
16322690 |
T |
|
| Q |
104 |
tgcctaatgggactattcaaacatgggaggaattagagcttaagtttctagagaagtatttccctatgtccaagtacttggataagaagcaagaaatagc |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16322689 |
tgcctaatgggactattcaaacatgggaggaattaaagcttaagtttctagagaagtatttccctatgtccaagtacttggataagaagcaagaaatagc |
16322590 |
T |
|
| Q |
204 |
aagcttccggcaaggtgaagatgaatcactttatgatgcttgggaaaggttcaatttgcttctgaagagatgtcca |
279 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16322589 |
aagcttccggcaaggtgaaggtgaatcactttatgatgcttgggaaaggttcaatttgcttctgaagagatgtcca |
16322514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 4 - 279
Target Start/End: Complemental strand, 18504764 - 18504489
Alignment:
| Q |
4 |
gagtttggtgttcctccaacaaatgttgatcaagaccaaaagaaactcaggcttttcccgttcactttaaacggtaaagctaaagactggttattgactt |
103 |
Q |
| |
|
|||||| ||||||||||| |||||||| || |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
18504764 |
gagttttgtgttcctccagcaaatgttaatgaagaccaaaagaaactcaggctattcccgttcactttaatcggtaaagctaaagactggttattgactt |
18504665 |
T |
|
| Q |
104 |
tgcctaatgggactattcaaacatgggaggaattagagcttaagtttctagagaagtatttccctatgtccaagtacttggataagaagcaagaaatagc |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18504664 |
tgcctaatgggactattcaaacatgggaggaattatagcttaagtttctagagaagtatttccctatgtccaagtacttggataagaagcaagaaatagc |
18504565 |
T |
|
| Q |
204 |
aagcttccggcaaggtgaagatgaatcactttatgatgcttgggaaaggttcaatttgcttctgaagagatgtcca |
279 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18504564 |
aagcttccggcaaggtgaaggtgaatcactttatgatgcttgggaaaggttcaatttgcttctgaagagatgtcca |
18504489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 4 - 279
Target Start/End: Original strand, 22018288 - 22018563
Alignment:
| Q |
4 |
gagtttggtgttcctccaacaaatgttgatcaagaccaaaagaaactcaggcttttcccgttcactttaaacggtaaagctaaagactggttattgactt |
103 |
Q |
| |
|
|||||| ||||||||||| |||||||| | | |||||||||||||| ||||| || |||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
22018288 |
gagttttgtgttcctccagcaaatgttactgatgaccaaaagaaacttaggctattttcgttcactttaaccggtaaagctaaagactggttattgactt |
22018387 |
T |
|
| Q |
104 |
tgcctaatgggactattcaaacatgggaggaattagagcttaagtttctagagaagtatttccctatgtccaagtacttggataagaagcaagaaatagc |
203 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22018388 |
tgcctaatgggactattcaaacatgggaagaattagagcttaagtttctagagaagtatttccctatgtccaagtacttggataagaagcaagaaatagc |
22018487 |
T |
|
| Q |
204 |
aagcttccggcaaggtgaagatgaatcactttatgatgcttgggaaaggttcaatttgcttctgaagagatgtcca |
279 |
Q |
| |
|
|||||| |||||||||||| ||||||| | ||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
22018488 |
aagctttcggcaaggtgaaagtgaatcattgtatgatgcttgggaaaggttcaatttgctactgaagagatgtcca |
22018563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 197
Target Start/End: Original strand, 11785769 - 11785960
Alignment:
| Q |
5 |
agtttggtgttcctccaacaaatgttgatcaagaccaaaagaaactcaggcttttcccgttcactttaaacggtaaagctaaagactggttattgacttt |
104 |
Q |
| |
|
||||| |||| |||||| |||||||| | |||||||||||||||| | | | || || |||||||| | || |||||||||||||||||| ||||||| |
|
|
| T |
11785769 |
agttttgtgtacctccagcaaatgttactgaagaccaaaagaaactgatgttgtttcctttcactttgaccgataaagctaaagactggttgctgacttt |
11785868 |
T |
|
| Q |
105 |
gcctaatgggactattcaaacatgggaggaattagagcttaagtttctagagaagtatttccctatgtccaagtacttggataagaagcaaga |
197 |
Q |
| |
|
|||||||| || ||||||||||||||||| ||||||| | |||| | ||||||| ||| ||||||||||||||||| || ||||| ||||| |
|
|
| T |
11785869 |
acctaatggtacaattcaaacatgggaggagctagagctgaggtttttggagaagt-tttacctatgtccaagtacttagacaagaaacaaga |
11785960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 334
Target Start/End: Original strand, 34899902 - 34899935
Alignment:
| Q |
301 |
agagaagaaccaaagagagatgtgtttatatgca |
334 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |
|
|
| T |
34899902 |
agagaagaactaaagagagatgtgtttatatgca |
34899935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 4 - 279
Target Start/End: Original strand, 24435939 - 24436214
Alignment:
| Q |
4 |
gagtttggtgttcctccaacaaatgttgatcaagaccaaaagaaactcaggcttttcccgttcactttaaacggtaaagctaaagactggttattgactt |
103 |
Q |
| |
|
|||||| ||||||||||| |||||||| || |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
24435939 |
gagttttgtgttcctccagcaaatgttaatgaagaccaaaagaaactcaggcttttcccgttcacattaatcggtaaagctaaagactggttattgactt |
24436038 |
T |
|
| Q |
104 |
tgcctaatgggactattcaaacatgggaggaattagagcttaagtttctagagaagtatttccctatgtccaagtacttggataagaagcaagaaatagc |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24436039 |
tgcctaatgggactattcaaacatgggaggaattagagcttaagtttctagagaagtatttccctatgtccaagtacttggataagaagcaagaaatagc |
24436138 |
T |
|
| Q |
204 |
aagcttccggcaaggtgaagatgaatcactttatgatgcttgggaaaggttcaatttgcttctgaagagatgtcca |
279 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
24436139 |
aagcttccggcaaggtgaaggtgaatcactttatgatgcttgggaaagattcaatttgcttctgaaaagatgtcca |
24436214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 157 - 279
Target Start/End: Complemental strand, 24902620 - 24902498
Alignment:
| Q |
157 |
aagtatttccctatgtccaagtacttggataagaagcaagaaatagcaagcttccggcaaggtgaagatgaatcactttatgatgcttgggaaaggttca |
256 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||| |||| |
|
|
| T |
24902620 |
aagtatttccctatgtccaagtacttggataagaagcaagaaatagcaagcttttagcaaggtgaaggtgaatcactttatgatgcttgcgaaagattca |
24902521 |
T |
|
| Q |
257 |
atttgcttctgaagagatgtcca |
279 |
Q |
| |
|
||||| | ||||||||||||||| |
|
|
| T |
24902520 |
atttgttactgaagagatgtcca |
24902498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 4 - 82
Target Start/End: Complemental strand, 24902696 - 24902618
Alignment:
| Q |
4 |
gagtttggtgttcctccaacaaatgttgatcaagaccaaaagaaactcaggcttttcccgttcactttaaacggtaaag |
82 |
Q |
| |
|
|||||| ||||||||||| |||||||| | |||||||||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
24902696 |
gagttttgtgttcctccagcaaatgttactgaagaccaaaagaaactcaggctattcccgttcactttaaccggtaaag |
24902618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 4 - 279
Target Start/End: Original strand, 22921437 - 22921712
Alignment:
| Q |
4 |
gagtttggtgttcctccaacaaatgttgatcaagaccaaaagaaactcaggcttttcccgttcactttaaacggtaaagctaaagactggttattgactt |
103 |
Q |
| |
|
|||||| ||||||||||| |||||||| || |||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
22921437 |
gagttttgtgttcctccagcaaatgttaatgaagaccaaaagaaactgaggctattcccgttcactttaatcggtaaagctaaagactggttattgactt |
22921536 |
T |
|
| Q |
104 |
tgcctaatgggactattcaaacatgggaggaattagagcttaagtttctagagaagtatttccctatgtccaagtacttggataagaagcaagaaatagc |
203 |
Q |
| |
|
| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22921537 |
ttcccaatgggactattcaaacatgggaggaattagagcttaagtttctagagaagtatttccctatgtccaagtacttggataagaagcaagaaatagc |
22921636 |
T |
|
| Q |
204 |
aagcttccggcaaggtgaagatgaatcactttatgatgcttgggaaaggttcaatttgcttctgaagagatgtcca |
279 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22921637 |
aagcttccggcaaggtgaaggtgaatcactttatgatgcttgggaaaggttcaatttgcttctgaagagatgtcca |
22921712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 4 - 279
Target Start/End: Original strand, 24401096 - 24401371
Alignment:
| Q |
4 |
gagtttggtgttcctccaacaaatgttgatcaagaccaaaagaaactcaggcttttcccgttcactttaaacggtaaagctaaagactggttattgactt |
103 |
Q |
| |
|
|||||| |||| ||||||||||||||| | |||||||||||||||| ||||| ||||| ||||| |||| ||| || | |||||||||||| |||| || |
|
|
| T |
24401096 |
gagttttgtgtgcctccaacaaatgttactgaagaccaaaagaaactgaggctattccccttcacgttaaccggaaagggtaaagactggttgttgaatt |
24401195 |
T |
|
| Q |
104 |
tgcctaatgggactattcaaacatgggaggaattagagcttaagtttctagagaagtatttccctatgtccaagtacttggataagaagcaagaaatagc |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
24401196 |
tgcctaatgggactattcaaacatgggaggagttagagcttaattttctagaaaagtatttccctatgtccaaatacttggataagaagcaagaaatagc |
24401295 |
T |
|
| Q |
204 |
aagcttccggcaaggtgaagatgaatcactttatgatgcttgggaaaggttcaatttgcttctgaagagatgtcca |
279 |
Q |
| |
|
|||||| |||||||| |||| ||||||||| |||||||| |||||||| ||||||||||| |||| |||||||||| |
|
|
| T |
24401296 |
aagctttcggcaaggggaaggtgaatcactctatgatgcctgggaaagattcaatttgctcctgaggagatgtcca |
24401371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0661 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: scaffold0661
Description:
Target: scaffold0661; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 4 - 279
Target Start/End: Original strand, 7818 - 8093
Alignment:
| Q |
4 |
gagtttggtgttcctccaacaaatgttgatcaagaccaaaagaaactcaggcttttcccgttcactttaaacggtaaagctaaagactggttattgactt |
103 |
Q |
| |
|
|||||| ||||||||||| |||||||| || ||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
7818 |
gagttttgtgttcctccagcaaatgttaatgaagaccaaaagaaactcaggcttttaccgttcacattaataggtaaagctaaagactggttattgactt |
7917 |
T |
|
| Q |
104 |
tgcctaatgggactattcaaacatgggaggaattagagcttaagtttctagagaagtatttccctatgtccaagtacttggataagaagcaagaaatagc |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7918 |
tgcctaatgggactattcaaacatgggaggaattagagcttaagtttctagagaagtatttccctatgtccaagtacttggataagaagcaagaaatagc |
8017 |
T |
|
| Q |
204 |
aagcttccggcaaggtgaagatgaatcactttatgatgcttgggaaaggttcaatttgcttctgaagagatgtcca |
279 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
8018 |
aagcttccggcaaggtgaaggtgaatcactttatgatgcttgggaaagattcaatttgcttctgaaaagatgtcca |
8093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 4 - 279
Target Start/End: Original strand, 14702814 - 14703089
Alignment:
| Q |
4 |
gagtttggtgttcctccaacaaatgttgatcaagaccaaaagaaactcaggcttttcccgttcactttaaacggtaaagctaaagactggttattgactt |
103 |
Q |
| |
|
|||||| ||||||||||| |||||||| | |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
14702814 |
gagttttgtgttcctccagcaaatgttactgaagaccaaaagaaactcaggctattcccgttcactttaaccggtaaagctaaagactagttattgactt |
14702913 |
T |
|
| Q |
104 |
tgcctaatgggactattcaaacatgggaggaattagagcttaagtttctagagaagtatttccctatgtccaagtacttggataagaagcaagaaatagc |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14702914 |
tgcctaatgggactattcaaacatgggaggagttagagcttaagtttctagaaaagtatttccctatgtccaagtacttggataagaagcaagaaatagc |
14703013 |
T |
|
| Q |
204 |
aagcttccggcaaggtgaagatgaatcactttatgatgcttgggaaaggttcaatttgcttctgaagagatgtcca |
279 |
Q |
| |
|
|||||| |||||||| |||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
14703014 |
aagctttcggcaaggggaaggtgaatcactttatgatgcttgggaaagattcaatttgctactgaagagatgtcca |
14703089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0084 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: scaffold0084
Description:
Target: scaffold0084; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 4 - 277
Target Start/End: Original strand, 20191 - 20464
Alignment:
| Q |
4 |
gagtttggtgttcctccaacaaatgttgatcaagaccaaaagaaactcaggcttttcccgttcactttaaacggtaaagctaaagactggttattgactt |
103 |
Q |
| |
|
|||||| ||||||||||| |||||||| |||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||| |||||| |||| |
|
|
| T |
20191 |
gagttttgtgttcctccagcaaatgttacagaagaccaaaagaaactcaggctattcacgttcactttaaccggtaaagctaaagactagttattaactt |
20290 |
T |
|
| Q |
104 |
tgcctaatgggactattcaaacatgggaggaattagagcttaagtttctagagaagtatttccctatgtccaagtacttggataagaagcaagaaatagc |
203 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20291 |
tgcctaatgggactattcaaacatgggaagaattagagctaaagtttctagaaaagtatttccctatgtccaagtacttggataagaagcaagaaatagc |
20390 |
T |
|
| Q |
204 |
aagcttccggcaaggtgaagatgaatcactttatgatgcttgggaaaggttcaatttgcttctgaagagatgtc |
277 |
Q |
| |
|
|||||| |||||||| |||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
20391 |
aagctttcggcaaggggaaggtgaatcactttatgatgcttgggaaagattcaatttgctactgaagagatgtc |
20464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 4 - 279
Target Start/End: Complemental strand, 26128 - 25853
Alignment:
| Q |
4 |
gagtttggtgttcctccaacaaatgttgatcaagaccaaaagaaactcaggcttttcccgttcactttaaacggtaaagctaaagactggttattgactt |
103 |
Q |
| |
|
|||||| ||||||||||| ||| |||| | |||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||| |||| |
|
|
| T |
26128 |
gagttttgtgttcctccagcaactgttactgaagaccaaaagaaactcaggctattcccgttcactttaaccggtaaagctaaagattggttattaactt |
26029 |
T |
|
| Q |
104 |
tgcctaatgggactattcaaacatgggaggaattagagcttaagtttctagagaagtatttccctatgtccaagtacttggataagaagcaagaaatagc |
203 |
Q |
| |
|
| || |||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26028 |
taccgaatgggactattcaaacatgggaggagttagagcttaagtttctagaaaaatatttccctatgtccaagtacttggataagaagcaagaaatagc |
25929 |
T |
|
| Q |
204 |
aagcttccggcaaggtgaagatgaatcactttatgatgcttgggaaaggttcaatttgcttctgaagagatgtcca |
279 |
Q |
| |
|
|||||| |||||||| |||| ||||||||| ||||||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
25928 |
aagctttcggcaaggggaaggtgaatcactgtatgatgcttgggaaaggttcaatttgttactgaagagatgtcca |
25853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 4 - 279
Target Start/End: Complemental strand, 34142409 - 34142145
Alignment:
| Q |
4 |
gagtttggtgttcctccaacaaatgttgatcaagaccaaaagaaactcaggcttttcccgttcactttaaacggtaaagctaaagactggttattgactt |
103 |
Q |
| |
|
|||||| ||||||||||| |||| || | |||||||||||||||| ||||| || ||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
34142409 |
gagttttgtgttcctccagcaaacgtcactgaagaccaaaagaaacttaggctatttccgttcactttaaccggtaaagctaaagactggttattgactt |
34142310 |
T |
|
| Q |
104 |
tgcctaatgggactattcaaacatgggaggaattagagcttaagtttctagagaagtatttccctatgtccaagtacttggataagaagcaagaaatagc |
203 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34142309 |
tgcctaatgggactattcaaacatgggaagaattagagctgaagtttc-----------ttccctatgtccaagtacttggataagaagcaagaaatagc |
34142221 |
T |
|
| Q |
204 |
aagcttccggcaaggtgaagatgaatcactttatgatgcttgggaaaggttcaatttgcttctgaagagatgtcca |
279 |
Q |
| |
|
|||||| ||||||||||| ||||||| | |||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
34142220 |
aagctttcggcaaggtgagagtgaatcattgtatgatgcttgggaaaggttcaatttgccactgaagagatgtcca |
34142145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 137 - 275
Target Start/End: Original strand, 22141066 - 22141204
Alignment:
| Q |
137 |
tagagcttaagtttctagagaagtatttccctatgtccaagtacttggataagaagcaagaaatagcaagcttccggcaaggtgaagatgaatcacttta |
236 |
Q |
| |
|
||||||||||||| | |||||||| || ||||||||||| || | ||||||||| ||||| || | | ||| |||||||| || ||| ||||| || |
|
|
| T |
22141066 |
tagagcttaagttcttggagaagtactttcctatgtccaaatattgggataagaaacaagagatttccatctttcggcaaggggagagtgagtcactata |
22141165 |
T |
|
| Q |
237 |
tgatgcttgggaaaggttcaatttgcttctgaagagatg |
275 |
Q |
| |
|
|||||||| |||||| || ||||||||||| |||||||| |
|
|
| T |
22141166 |
tgatgcttaggaaagatttaatttgcttcttaagagatg |
22141204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0126 (Bit Score: 136; Significance: 6e-71; HSPs: 1)
Name: scaffold0126
Description:
Target: scaffold0126; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 4 - 251
Target Start/End: Complemental strand, 13521 - 13274
Alignment:
| Q |
4 |
gagtttggtgttcctccaacaaatgttgatcaagaccaaaagaaactcaggcttttcccgttcactttaaacggtaaagctaaagactggttattgactt |
103 |
Q |
| |
|
|||||| ||||||||||| |||||||| | |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| | |
|
|
| T |
13521 |
gagttttgtgttcctccagcaaatgttactgaagaccaaaagaaactcaggctattcccgttcactttaaccggtaaagctaaagactggttattgacat |
13422 |
T |
|
| Q |
104 |
tgcctaatgggactattcaaacatgggaggaattagagcttaagtttctagagaagtatttccctatgtccaagtacttggataagaagcaagaaatagc |
203 |
Q |
| |
|
| ||||||||||| || ||||||||||| || | ||||| |||||| ||||||||| ||||||||||||||||||| |||||||||| ||||| ||||| |
|
|
| T |
13421 |
ttcctaatgggaccatccaaacatgggatgagctggagctgaagtttttagagaagtttttccctatgtccaagtacctggataagaaacaagagatagc |
13322 |
T |
|
| Q |
204 |
aagcttccggcaaggtgaagatgaatcactttatgatgcttgggaaag |
251 |
Q |
| |
|
| ||| ||||||| |||| ||| ||||||||||||||||||||||| |
|
|
| T |
13321 |
caactttaggcaaggggaaggtgagtcactttatgatgcttgggaaag |
13274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0218 (Bit Score: 128; Significance: 4e-66; HSPs: 1)
Name: scaffold0218
Description:
Target: scaffold0218; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 4 - 251
Target Start/End: Original strand, 11326 - 11573
Alignment:
| Q |
4 |
gagtttggtgttcctccaacaaatgttgatcaagaccaaaagaaactcaggcttttcccgttcactttaaacggtaaagctaaagactggttattgactt |
103 |
Q |
| |
|
|||||| ||||||||||| ||||| || | || || |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
11326 |
gagttttgtgttcctccagcaaattttagtgaacacaaaaagaaactcaggctattcccgttcactttaaccggtaaagctaaagactggttattgactt |
11425 |
T |
|
| Q |
104 |
tgcctaatgggactattcaaacatgggaggaattagagcttaagtttctagagaagtatttccctatgtccaagtacttggataagaagcaagaaatagc |
203 |
Q |
| |
|
| ||||||| ||| |||||||||||||| || ||||||||||||||| || |||||| ||||||||||||||||||| | |||||||| ||||| ||||| |
|
|
| T |
11426 |
ttcctaatgagaccattcaaacatgggatgagttagagcttaagtttttatagaagtttttccctatgtccaagtacctagataagaaacaagagatagc |
11525 |
T |
|
| Q |
204 |
aagcttccggcaaggtgaagatgaatcactttatgatgcttgggaaag |
251 |
Q |
| |
|
| ||| ||||||| |||| ||| ||||||||||||| ||||||||| |
|
|
| T |
11526 |
caactttaggcaaggggaaggtgagtcactttatgatgattgggaaag |
11573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 124; Significance: 9e-64; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 4 - 251
Target Start/End: Original strand, 13843547 - 13843794
Alignment:
| Q |
4 |
gagtttggtgttcctccaacaaatgttgatcaagaccaaaagaaactcaggcttttcccgttcactttaaacggtaaagctaaagactggttattgactt |
103 |
Q |
| |
|
|||||| ||||||||||| |||||||| | |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
13843547 |
gagttttgtgttcctccagcaaatgttactgaagaccaaaagaaactcaggctattcccgttcactttaaccggtaaagctaaagactggttattgactt |
13843646 |
T |
|
| Q |
104 |
tgcctaatgggactattcaaacatgggaggaattagagcttaagtttctagagaagtatttccctatgtccaagtacttggataagaagcaagaaatagc |
203 |
Q |
| |
|
|||| |||||||| || |||||||| || || || || || |||||| ||||||||| ||||||||||||||||||| |||||||||| |||| ||||| |
|
|
| T |
13843647 |
tgccgaatgggaccatccaaacatgagatgagttggacctgaagtttttagagaagtttttccctatgtccaagtacctggataagaaacaagggatagc |
13843746 |
T |
|
| Q |
204 |
aagcttccggcaaggtgaagatgaatcactttatgatgcttgggaaag |
251 |
Q |
| |
|
| ||| ||| || |||| ||| ||||||||||||||||||||||| |
|
|
| T |
13843747 |
caactttatgcacggggaaggtgagtcactttatgatgcttgggaaag |
13843794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 275
Target Start/End: Original strand, 47862 - 48032
Alignment:
| Q |
109 |
aatgggactattcaaacatgggaggaattagagcttaa----gtttctagagaagtatttccctatgtccaagtacttggataagaagcaagaaatagca |
204 |
Q |
| |
|
||||| || |||||||||||||| || ||||||||||| ||| |||||||||| || ||||||||||| || | ||| ||||| ||||| || ||| |
|
|
| T |
47862 |
aatggaaccattcaaacatgggaagagttagagcttaattaagttcttagagaagtaatttcctatgtccaaatattgggacaagaaacaagagattgca |
47961 |
T |
|
| Q |
205 |
agcttccggcaaggtgaagatgaatcactttatgatgcttgggaaaggttcaatttgcttctgaagagatg |
275 |
Q |
| |
|
| || ||||||| || |||| |||||||||||| |||||| || || || ||||||||||||||||| |
|
|
| T |
47962 |
aagtttaggcaaggagagagtgaaacactttatgatgtttgggagagatttaacttgcttctgaagagatg |
48032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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