View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_135 (Length: 330)
Name: NF7829A_low_135
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_135 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 30 - 330
Target Start/End: Complemental strand, 4274629 - 4274328
Alignment:
| Q |
30 |
ttttgatattgtggcaatccattactatccttaatgttacgattgtcatttcaaagatctttaaatttaccgacgaatgttggttcaagtggcaagaaag |
129 |
Q |
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| T |
4274629 |
ttttgatattgtggcaatccattactatccttaatgttacgattgtcatttcaaagatctttaaatttaccgacgaatgttggttcaagtggcaagaaag |
4274530 |
T |
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| Q |
130 |
tttggtgctcctaagtacgatatgaggttgagtcttgtaaatggaaaaatttatgttattccctttattcttatctactgactcagttcatgtcatacat |
229 |
Q |
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| T |
4274529 |
tttggtgctcctaagtacgatatgaggttgaatcttgtaaatggaaaaatttatgttattccctttattcttatctactgactcagttcatgtcatacat |
4274430 |
T |
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| Q |
230 |
atagtgttaacgacaaaatattctaacaagtccaataa-nnnnnnnncctaaatgttaatccgaatttgtttttcttaaactaaacaatctttaaatttt |
328 |
Q |
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| T |
4274429 |
atagtgtaaacgacaaaatattctaataagtccaataatttttttttcctaaatgttaatccgaatttgtttttcttaaactaaacaatctttaaatttt |
4274330 |
T |
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| Q |
329 |
tc |
330 |
Q |
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| T |
4274329 |
tc |
4274328 |
T |
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