View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_139 (Length: 328)
Name: NF7829A_low_139
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_139 |
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Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 23 - 312
Target Start/End: Complemental strand, 30942039 - 30941750
Alignment:
| Q |
23 |
ggttctggttgtccataaaacatacaaccttgtacatgaaccttagtttttccaaattggcctaagtaacgaaggaaatccaaaacatggttgctattgc |
122 |
Q |
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| T |
30942039 |
ggttctggttgtccataaaacatacaaccttgtacatgaaccttagtttttccaaattggtctaagtaacgaaggaaatccaaaacatggttgctattgc |
30941940 |
T |
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| Q |
123 |
actgtgaaagtggaactggtggtctcatgttgttcaagtattgaccaaaagtgttccaatctcttctcttttgtgattcgtagcgactaggtgtcgctac |
222 |
Q |
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| T |
30941939 |
actgtgaaagtggaactggtggtctcatgttgttcaagtattgaccaaaagtgttccaatctcttctcttttgtgattcgtagcgactaagtgtcgctac |
30941840 |
T |
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| Q |
223 |
tgaaatggttgttgatgatgtttcttgctccaaattcttgccatgaaaattgctaccactagtagacattttcttgtgtgtgtgttgatg |
312 |
Q |
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| T |
30941839 |
tgaaatggttgttgatgatgtttcttgctccaaattcttgccatgaaaattgctaccactagtagacattttcttgtgtgtgtgttgatg |
30941750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 204
Target Start/End: Complemental strand, 37974981 - 37974937
Alignment:
| Q |
160 |
gtattgaccaaaagtgttccaatctcttctcttttgtgattcgta |
204 |
Q |
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| T |
37974981 |
gtattgaccaaaagtgttccaatcacgtctcttttgtgactcgta |
37974937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 95; Significance: 2e-46; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 26 - 216
Target Start/End: Complemental strand, 39556547 - 39556357
Alignment:
| Q |
26 |
tctggttgtccataaaacatacaaccttgtacatgaaccttagtttttccaaattggcctaagtaacgaaggaaatccaaaacatggttgctattgcact |
125 |
Q |
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| T |
39556547 |
tctggctgtccataaaacatacaaccttgtaaatgaactttggtttttccaaattgatctaaatacctaagaaattccaacacatggttggaattgcagt |
39556448 |
T |
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| Q |
126 |
gtgaaagtggaactggtggtctcatgttgttcaagtattgaccaaaagtgttccaatctcttctcttttgtgattcgtagcgactaggtgt |
216 |
Q |
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| T |
39556447 |
gagaaagtggaacgggtggtcttaggttgtttaagtattgaccaaaagtgttccaatctcttctcttttgagattcatagcggctaagtgt |
39556357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 158 - 211
Target Start/End: Original strand, 32002342 - 32002395
Alignment:
| Q |
158 |
aagtattgaccaaaagtgttccaatctcttctcttttgtgattcgtagcgacta |
211 |
Q |
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| T |
32002342 |
aagtattgtccaaaagtgttccaatctcttctcttttgtgactcgtatcgacta |
32002395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 4863169 - 4863129
Alignment:
| Q |
59 |
tgaaccttagtttttccaaattggcctaagtaacgaaggaa |
99 |
Q |
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| T |
4863169 |
tgaaccttagtctttccaaattgatctaagtaacgaaggaa |
4863129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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