View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7829A_low_142 (Length: 326)

Name: NF7829A_low_142
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7829A_low_142
NF7829A_low_142
[»] chr4 (7 HSPs)
chr4 (182-320)||(37252927-37253065)
chr4 (18-115)||(37252751-37252848)
chr4 (185-319)||(37232684-37232815)
chr4 (194-273)||(37244881-37244960)
chr4 (189-319)||(37257059-37257198)
chr4 (277-319)||(37237700-37237742)
chr4 (45-113)||(37256922-37256990)
[»] chr6 (3 HSPs)
chr6 (188-272)||(14316682-14316766)
chr6 (188-273)||(14253954-14254039)
chr6 (188-267)||(14248144-14248223)
[»] scaffold0902 (1 HSPs)
scaffold0902 (188-265)||(3200-3277)
[»] scaffold1652 (1 HSPs)
scaffold1652 (187-262)||(595-670)
[»] scaffold1176 (1 HSPs)
scaffold1176 (188-267)||(371-450)
[»] scaffold1801 (1 HSPs)
scaffold1801 (226-266)||(268-308)


Alignment Details
Target: chr4 (Bit Score: 119; Significance: 9e-61; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 182 - 320
Target Start/End: Original strand, 37252927 - 37253065
Alignment:
Q  182 ctcgagtaactctctatagcatcaaagcggcggcgaaaaccaccacagcagcagatccggcaacggtaaatctgttcaaagcggcgccgttttcggaagg 281  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  37252927 ctcgagtaactctctatagtatcaaagcggcggcgaaaaccactacagcagcagatccggcaacggtaaatctgttcaaagcggcaccgttttcggaagg 37253026  T
Q  282 tccttcagaaggaggagtggagatggatgatggagtaag 320  Q
    |||||| |||||||||||||| |||||||||||||||||    
T  37253027 tccttcggaaggaggagtggaaatggatgatggagtaag 37253065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 37252751 - 37252848
Alignment:
Q  18 aaaaaatgtatcactgattaattaaagtaataaatagattacagaaaataatcgaatgaataaatcgtcgtcgcacagatcgaaaccgagaaacaaca 115  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  37252751 aaaaaatgtgtcactgattaattaaagtaataaatagattacagaaaataatcgaatgaataaatcgtcgtcgcacagatcgaaacagagaaacaaca 37252848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 185 - 319
Target Start/End: Original strand, 37232684 - 37232815
Alignment:
Q  185 gagtaactctctatagcatcaaagcggcggcgaaaaccaccacagcagcagatccggcaacggtaaatctgttcaaagcggcgccgttttcggaaggtcc 284  Q
    ||||||||||||| | |||||||||||| ||||||| ||| ||||||||||||||||||||||| ||||| ||||||||||||||||||   || ||| |    
T  37232684 gagtaactctctacatcatcaaagcggcagcgaaaatcacaacagcagcagatccggcaacggtgaatctattcaaagcggcgccgttt---gatggtgc 37232780  T
Q  285 ttcagaaggaggagtggagatggatgatggagtaa 319  Q
    ||||| ||||||||||||||| |||||||||||||    
T  37232781 ttcagcaggaggagtggagatcgatgatggagtaa 37232815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 194 - 273
Target Start/End: Original strand, 37244881 - 37244960
Alignment:
Q  194 tctatagcatcaaagcggcggcgaaaaccaccacagcagcagatccggcaacggtaaatctgttcaaagcggcgccgttt 273  Q
    |||||| ||||||| | || ||||||||||| |||||||||||||||||||| || |||||||| |||||||||||||||    
T  37244881 tctatatcatcaaaacagcagcgaaaaccacaacagcagcagatccggcaacagtgaatctgttgaaagcggcgccgttt 37244960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 189 - 319
Target Start/End: Original strand, 37257059 - 37257198
Alignment:
Q  189 aactctctatagcatcaaagcggcggcgaaaaccaccacagcagcagatccggcaacggtaaatctgttcaaagcggcgccg---ttttcggaaggtc-- 283  Q
    ||||||||| | ||||||||| |||||||||||||  |||||||||||||| |||||||| |||||||| ||||||||| ||   || || ||||||       
T  37257059 aactctctacatcatcaaagcagcggcgaaaaccataacagcagcagatccagcaacggtgaatctgttaaaagcggcggcggagttgtctgaaggtgaa 37257158  T
Q  284 ----cttcagaaggaggagtggagatggatgatggagtaa 319  Q
        |||||||||||| ||| |||||||||||||||||||    
T  37257159 ggtgcttcagaaggagtagtagagatggatgatggagtaa 37257198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 277 - 319
Target Start/End: Original strand, 37237700 - 37237742
Alignment:
Q  277 gaaggtccttcagaaggaggagtggagatggatgatggagtaa 319  Q
    |||||| |||||||||||||||| |||||||||||||||||||    
T  37237700 gaaggtgcttcagaaggaggagtagagatggatgatggagtaa 37237742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 113
Target Start/End: Original strand, 37256922 - 37256990
Alignment:
Q  45 taataaatagattacagaaaataatcgaatgaataaatcgtcgtcgcacagatcgaaaccgagaaacaa 113  Q
    |||| ||||||||||||||||||||  ||||||| ||| || ||| ||||||||||||| ||| |||||    
T  37256922 taatcaatagattacagaaaataataaaatgaatgaatggtagtcacacagatcgaaacagagcaacaa 37256990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 9e-24; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 188 - 272
Target Start/End: Original strand, 14316682 - 14316766
Alignment:
Q  188 taactctctatagcatcaaagcggcggcgaaaaccaccacagcagcagatccggcaacggtaaatctgttcaaagcggcgccgtt 272  Q
    |||||||||| | ||||||||| || ||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||    
T  14316682 taactctctacatcatcaaagcagcagcgaaaaccacgacagcagcagatccggcaagggtaaatctgttcaaagcggcgtcgtt 14316766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 188 - 273
Target Start/End: Original strand, 14253954 - 14254039
Alignment:
Q  188 taactctctatagcatcaaagcggcggcgaaaaccaccacagcagcagatccggcaacggtaaatctgttcaaagcggcgccgttt 273  Q
    |||||||||| | ||||||||| || ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||| |||||    
T  14253954 taactctctacatcatcaaagcagcagcgaaaaccacgacagcagcagatccagcaactgtaaatctgttcaaagcggcgtcgttt 14254039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 188 - 267
Target Start/End: Original strand, 14248144 - 14248223
Alignment:
Q  188 taactctctatagcatcaaagcggcggcgaaaaccaccacagcagcagatccggcaacggtaaatctgttcaaagcggcg 267  Q
    |||||||||| | ||||||||| ||  | |||||||| ||||||| |||||||||||| |||||||||||||||||||||    
T  14248144 taactctctacatcatcaaagcagcaacaaaaaccacgacagcagtagatccggcaactgtaaatctgttcaaagcggcg 14248223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0902 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0902
Description:

Target: scaffold0902; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 188 - 265
Target Start/End: Original strand, 3200 - 3277
Alignment:
Q  188 taactctctatagcatcaaagcggcggcgaaaaccaccacagcagcagatccggcaacggtaaatctgttcaaagcgg 265  Q
    |||||||||| | ||||||||| || | ||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  3200 taactctctacatcatcaaagcagccgtgaaaaccacgacagcagcagatccggcaactgtaaatctgttcaaagcgg 3277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1652 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold1652
Description:

Target: scaffold1652; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 187 - 262
Target Start/End: Complemental strand, 670 - 595
Alignment:
Q  187 gtaactctctatagcatcaaagcggcggcgaaaaccaccacagcagcagatccggcaacggtaaatctgttcaaag 262  Q
    ||||||||||| | ||||||||| || | ||||||||| |||||||||||||||||||| ||||||||||||||||    
T  670 gtaactctctacatcatcaaagcagcagtgaaaaccacgacagcagcagatccggcaactgtaaatctgttcaaag 595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1176 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold1176
Description:

Target: scaffold1176; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 188 - 267
Target Start/End: Complemental strand, 450 - 371
Alignment:
Q  188 taactctctatagcatcaaagcggcggcgaaaaccaccacagcagcagatccggcaacggtaaatctgttcaaagcggcg 267  Q
    |||||||||| | ||||||||| ||   ||||||||| ||||||| |||||||||||| |||||||||||||||||||||    
T  450 taactctctacatcatcaaagcagcaatgaaaaccacgacagcagtagatccggcaactgtaaatctgttcaaagcggcg 371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1801 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold1801
Description:

Target: scaffold1801; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 226 - 266
Target Start/End: Complemental strand, 308 - 268
Alignment:
Q  226 acagcagcagatccggcaacggtaaatctgttcaaagcggc 266  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  308 acagcagcagatccggcaactgtaaatctgttcaaagcggc 268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University