View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7829A_low_146 (Length: 323)
Name: NF7829A_low_146
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_146 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 19 - 323
Target Start/End: Original strand, 36494899 - 36495203
Alignment:
| Q |
19 |
catcatatatatattctcacttatgtttggctaattttcaggattcttaatgcatatgccaaggtgcctccaaagttaaaggtctcttctacaaagaggt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36494899 |
catcatatatatattctcacttatgtttggctaattttcaggattcttaatgcatatgccaaggtgcctccaaagttaaaggtctcttctacaaagaggt |
36494998 |
T |
|
| Q |
119 |
aattatatgtttctagcaacaccttattgctctccaatgaatggcagagctggtttaatcaatattattatatttctttgctctatctaccccgttctac |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36494999 |
aattatatgtttctagcaacaccttattgctctccaatgaatggcagagctggtttaatcaatattattatatttctttgctctatctaccccgttctac |
36495098 |
T |
|
| Q |
219 |
tctactattatatattcatatccatgcatttgacaaatgcatggggtttgaagtgatcttcatggacgacttctctttctgttgcatgttttgtttgcaa |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
36495099 |
tctactattatatattcatatccatgcatttgacaaatgcatggggtttgaagtgatcttcatggacgacttctctttctgttgcatgttttgtttgcga |
36495198 |
T |
|
| Q |
319 |
gttct |
323 |
Q |
| |
|
||||| |
|
|
| T |
36495199 |
gttct |
36495203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University